Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5141 91.5 2e-13 seq5138 91.5 2e-13 seq17 91.5 2e-13 seq4606 86.0 9e-12 seq7 86.0 9e-12 >seq5141 Length=2555 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||||||||| || || |||| || | ||| || ||||| || || || || Sbjct 809 GTCCCACCTCTAAGCCTCAAGACCAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCC 868 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || | |||||| ||||| || |||| || ||||||||||| Sbjct 869 GCAAGGGTTCGACCATCTTCAAGTTGTTTACCAGCGAATATCAGCCTCTGCTGATCCGGT 928 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 929 GGTATTCCTTCTTTGTCCTG 948 >seq5138 Length=2557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||||||||| || || |||| || | ||| || ||||| || || || || Sbjct 809 GTCCCACCTCTAAGCCTCAAGACCAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCC 868 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || | |||||| ||||| || |||| || ||||||||||| Sbjct 869 GCAAGGGTTCGACCATCTTCAAGTTGTTTACCAGCGAATATCAGCCTCTGCTGATCCGGT 928 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 929 GGTATTCCTTCTTTGTCCTG 948 >seq17 Length=44223734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||||||||| || || |||| || | ||| || ||||| || || || || Sbjct 24310225 GTCCCACCTCTAAGCCTCAAGACCAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCC 24310284 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || | |||||| ||||| || |||| || ||||||||||| Sbjct 24310285 GCAAGGGTTCGACCATCTTCAAGTTGTTTACCAGCGAATATCAGCCTCTGCTGATCCGGT 24310344 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 24310345 GGTATTCCTTCTTTGTCCTG 24310364 >seq4606 Length=3131 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||| ||||| || || ||||| || | || || ||||| || || || || Sbjct 356 GTGCCACCCCTAAGCCTCAAGACCAAGTGAAGCGTTGACTCTTTCTGGATGTTGTAGTCC 415 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| |||| ||| || ||||| || |||| || || |||||||| Sbjct 416 GCAAGGGTTCTACCATCTTCTAGTTGCTTCCCAGCGAATATCAGCCTCTGTTGATCCGGC 475 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 476 GGTATTCCTTCTTTGTCCTG 495 >seq7 Length=28547970 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||| ||||| || || ||||| || | || || ||||| || || || || Sbjct 9161156 GTGCCACCCCTAAGCCTCAAGACCAAGTGAAGCGTTGACTCTTTCTGGATGTTGTAGTCC 9161097 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| |||| ||| || ||||| || |||| || || |||||||| Sbjct 9161096 GCAAGGGTTCTACCATCTTCTAGTTGCTTCCCAGCGAATATCAGCCTCTGTTGATCCGGC 9161037 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 9161036 GGTATTCCTTCTTTGTCCTG 9161017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743435819896320