Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq133 89.7 4e-13 >seq1 Length=45320942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 93/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| | |||||||| || ||| | ||| || ||||||||||| ||| || | || Sbjct 9628029 ATGGCACTTCCTCCATGCCACATGTT-TGCTCAGTTTTACGTTGCGAATGGAGAGCTTTC 9628087 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||||||||||||||| || || ||||||||||| || ||||| ||||| || ||||| Sbjct 9628088 GTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGC 9628144 >seq133 Length=227095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| | |||||||| || ||| | ||| || ||||||||||| ||| || | || Sbjct 171800 ATGGCACTTCCTCCATGCCACATGTT-TGCTCAGTTTTACGTTGCCAATGGAGAGCTTTC 171858 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 |||||||||||||| || || ||||||||||| || ||||| || || || ||||| Sbjct 171859 ATGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 171918 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGT 20552 || | || ||||| | ||| | || ||||| Sbjct 171919 ATACTCCCTTCTTACATGTATCCTCGCTCATGT 171951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399136585173970