Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 4e-13 seq6 89.7 4e-13 seq5 89.7 4e-13 seq12 84.2 2e-11 >seq13 Length=83567108 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||| || || ||||| || || |||||||| |||||| Sbjct 62923885 CCACCACGGAGCCTGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCC 62923826 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||||||| || || || || ||||||| ||||| |||||| ||| Sbjct 62923825 AACGTCCTGCCGTCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGA 62923766 Query 18219 ACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 62923765 ATGCCTTCCTTATC 62923752 >seq6 Length=38054609 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | | |||| ||| || || || ||||| |||||||||||||| || Sbjct 21965386 CCTCCACGTAGACGCAAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCT 21965327 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| ||||| || ||||| ||| |||| | || || || ||| ||| Sbjct 21965326 AGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGG 21965267 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | |||||| | ||| ||||||| | ||| Sbjct 21965266 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACC 21965207 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || | || || ||||| || || |||||||||||||| Sbjct 21965206 TCCAAAGTAATCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 21965160 >seq5 Length=38841276 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | | |||| |||||| ||||| ||||| ||||||||||| || ||| Sbjct 24217590 CCTCCACGTAGACGCAAGACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGCC 24217531 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||| || || || ||| |||| | || || || ||| || Sbjct 24217530 AAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 24217471 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| || | ||| || | ||| ||||||| | ||| Sbjct 24217470 ATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCTCTCAACC 24217411 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || |||||||| || || ||||| || ||||| Sbjct 24217410 TCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 24217364 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || || || || || ||||||||||| ||| Sbjct 24217362 CCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 24217303 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||| || ||||| || ||||||| || || |||||| || Sbjct 24217302 AAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGG 24217243 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| ||| | ||| || | | | ||||| | ||| Sbjct 24217242 ATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACC 24217183 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || ||||| | ||||| || || || ||||| Sbjct 24217182 TCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 24217136 >seq12 Length=60369500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || || || || || || |||||||| ||| Sbjct 48264542 CCACCACGAAGCCTGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAGCC 48264483 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||||||||| || || || ||||||| || || |||||| || Sbjct 48264482 AAGGTCCTGCCATCTTCCAATTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGTGGG 48264423 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 48264422 ATACCTTCCTTATC 48264409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379298941756770