Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq133 132 1e-25 seq1 127 4e-24 seq18 102 2e-16 seq3 100 6e-16 >seq133 Length=227095 Score = 132 bits (146), Expect = 1e-25 Identities = 150/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| || ||| || |||| || ||| |||| ||||||||| || ||| | | Sbjct 171738 AGAACAATCCTGACGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGC 171797 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| ||||| || || |||||||| | | Sbjct 171798 TGATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCCAATGGAGAGCTTT 171857 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 171858 CATGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCGTTTAACATTGC 171915 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||| ||||| || Sbjct 171916 CTCATACTCCCTTCTTAC 171933 >seq1 Length=45320942 Score = 127 bits (140), Expect = 4e-24 Identities = 149/198 (75%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| || ||| | |||| || ||| | || ||||||||| || ||| | | Sbjct 9627967 AGAACAATCCTGACGATCGGCGGATTATAATGTCTGCTTGGAATCCTTCTGACCTTAAGC 9628026 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| ||||| || || |||||||| | | Sbjct 9628027 TGATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCGAATGGAGAGCTTT 9628086 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||| || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 9628087 CGTGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCTTTTAACATTGC 9628144 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||| ||||| || Sbjct 9628145 CTCATACTCCCTTCTTAC 9628162 Score = 100 bits (110), Expect = 6e-16 Identities = 146/201 (73%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGAT--GATTATGACGGCATGGAATCCTATGGATCTTCA 35574 |||| ||||| |||||| | | || |||||| | || ||||| ||| || || | Sbjct 31775617 AGAACAATCCTGATGATCGGCGTATCAGATTAT--CTGCTTGGAACCCTTCTGACCTCAA 31775560 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATT 35634 || ||||| || ||||| ||||||||| ||| || || |||||||| | || || | Sbjct 31775559 GCTGATGGCGCTGCCTCCGTGCCACATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCT 31775500 Query 35635 GTCGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATT 35692 || |||||| |||||||||| |||||| ||| | | || ||||| || || ||| Sbjct 31775499 CTCATGCCAGATGTATCAGCGTTCAGCGGATATGA--GCCTTGGTGTGCCGTTTAACATT 31775442 Query 35693 GCATCATACTCTCTTCTGACT 35713 || || ||||||||||| ||| Sbjct 31775441 GCTTCCTACTCTCTTCTTACT 31775421 >seq18 Length=77673080 Score = 102 bits (112), Expect = 2e-16 Identities = 144/199 (72%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| | | || || | |||| ||||||||| ||||| | Sbjct 7477410 AGAACAATCCTGATGATCGTCGTATCATATTATCGGCTTGGAATCCTTCTGATCTCAAGT 7477351 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| || || || || |||| | || || | | Sbjct 7477350 TGATGGCGCTTCCTCCATGCCACATGTTCGCACAGTTCTACGTGGTGGACGGGGAGCTCT 7477291 Query 35637 CGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||| || |||||||||| |||||| ||| || | || ||||| || || ||||| Sbjct 7477290 CGTGTCAAATGTATCAGCGTTCAGCGGATATG--GGCCTCGGTGTGCCGTTTAACATTGC 7477233 Query 35695 ATCATACTCTCTTCTGACT 35713 || ||||||||||| ||| Sbjct 7477232 TTCCTACTCTCTTCTTACT 7477214 >seq3 Length=43957692 Score = 100 bits (110), Expect = 6e-16 Identities = 146/201 (73%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGAT--GATTATGACGGCATGGAATCCTATGGATCTTCA 35574 |||| ||||| |||||| | | || |||||| | || ||||| ||| || || | Sbjct 31765617 AGAACAATCCTGATGATCGGCGTATCAGATTAT--CTGCTTGGAACCCTTCTGACCTCAA 31765674 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATT 35634 || ||||| || ||||| ||||||||| ||| || || |||||||| | || || | Sbjct 31765675 GCTGATGGCGCTGCCTCCGTGCCACATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCT 31765734 Query 35635 GTCGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATT 35692 || |||||| |||||||||| |||||| ||| | | || ||||| || || ||| Sbjct 31765735 CTCATGCCAGATGTATCAGCGTTCAGCGGATATGA--GCCTTGGTGTGCCGTTTAACATT 31765792 Query 35693 GCATCATACTCTCTTCTGACT 35713 || || ||||||||||| ||| Sbjct 31765793 GCTTCCTACTCTCTTCTTACT 31765813 Score = 100 bits (110), Expect = 6e-16 Identities = 146/201 (73%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGAT--GATTATGACGGCATGGAATCCTATGGATCTTCA 35574 |||| ||||| |||||| | | || |||||| | || ||||| ||| || || | Sbjct 31810124 AGAACAATCCTGATGATCGGCGTATCAGATTAT--CTGCTTGGAACCCTTCTGACCTCAA 31810067 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATT 35634 || ||||| || ||||| ||||||||| ||| || || |||||||| | || || | Sbjct 31810066 GCTGATGGCGCTGCCTCCGTGCCACATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCT 31810007 Query 35635 GTCGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATT 35692 || |||||| |||||||||| |||||| ||| | | || ||||| || || ||| Sbjct 31810006 CTCATGCCAGATGTATCAGCGTTCAGCGGATATGA--GCCTTGGTGTGCCGTTTAACATT 31809949 Query 35693 GCATCATACTCTCTTCTGACT 35713 || || ||||||||||| ||| Sbjct 31809948 GCTTCCTACTCTCTTCTTACT 31809928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989460430027430