Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16 143 3e-29 seq18 132 6e-26 seq159 118 1e-21 seq6 116 5e-21 seq8 104 3e-17 >seq16 Length=18736220 Score = 143 bits (158), Expect = 3e-29 Identities = 243/348 (70%), Gaps = 8/348 (2%) Strand=Plus/Minus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || ||||| ||||||||||| || |||||||| || | ||||| || || Sbjct 836960 ATCAGGCACGCGAAGTCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 836901 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 ||||| || ||||| || |||||||| || ||||| || || || ||| || || Sbjct 836900 GTGAGCCCCGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTCCCCGAG 836841 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33755 |||||||| ||||| || |||||| || | | ||||| || | ||| |||| | Sbjct 836840 AAGAAGATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCAAA---GGC-CTGTGA 836785 Query 33756 T--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | || |||||| | ||||| | ||||||||| || || || ||||| || || Sbjct 836784 TCCGTCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGAT 836725 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 || ||||||| || | || || |||| || | |||||||| | || ||||| Sbjct 836724 CGCGCGGAAGAGATGGTCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGACT 836665 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 ||||| || || || ||||| || || || ||||| || |||||||| Sbjct 836664 GTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAA 836617 >seq18 Length=77673080 Score = 132 bits (146), Expect = 6e-26 Identities = 403/613 (66%), Gaps = 10/613 (2%) Strand=Plus/Plus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || |||||||||||||| || || |||||||| || | ||||| || || Sbjct 68188277 ATCAGGCACGCGAAATCGCAGTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 68188336 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || | |||||||| || || ||||| || ||||| || || || ||| ||||| Sbjct 68188337 GTCAACCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAG 68188396 Query 33696 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCGCTG 33752 |||||||| ||||| || ||| || ||||| | | ||||| | || | || | Sbjct 68188397 AAGAAGATCCCTTCCAC-GCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGAC-- 68188453 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 ||| |||||| | ||||| | ||||||||| || || || || || || || Sbjct 68188454 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 68188513 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || ||||||| || | || || | || || | || || || | || || || Sbjct 68188514 GCGCGGAAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 68188573 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 ||||| || || || ||||| || || || ||||| || |||||||| | |||||| Sbjct 68188574 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 68188633 Query 33933 GTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | | ||| || || | ||| || ||| || | || || || ||||| || Sbjct 68188634 GAGACCTGGACGTC-GGACATGAACCGTGAGGCGAGGTTCTCGAGGACGATTCCGTCGGA 68188692 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 34050 ||| || || || || | || ||||| || || | || || | ||| || || | Sbjct 68188693 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 68188751 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 68188752 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 68188811 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 34170 |||| || ||||| | |||||| | | |||||||||||||| || ||||| | || Sbjct 68188812 CCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATTGGGAACATGCAGAATCTGTCTG 68188871 Query 34171 GATTTGGTGCAAG 34183 | |||| | ||| Sbjct 68188872 GGGTTGGGGTAAG 68188884 >seq159 Length=194462 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 113489 AGTTCCTGAATTGAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 113430 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | ||||| || || ||||| || || || || || | ||| | ||| | Sbjct 113429 GTAAGTTTGGATAGCAGAATCAATATCTTCTTTGTGGATGCCAACAGAGACCCTCATGAG 113370 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||||| ||| || | |||||| | ||| ||| | || | Sbjct 113369 CATGTGCTGAGGCCTTTCAACAACTTTCGCATTGACTTTCAAGAGGTATGATCTCTCAAG 113310 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || ||||| |||| ||| ||| || || ||||| || || Sbjct 113309 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCGTAGATGAT 113262 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 113797 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 113738 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || || |||||| || || || || | |||| ||||| || || |||||| Sbjct 113737 ATTAGAAGCACCATTAGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGA 113678 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | |||||| ||||| || |||| || | ||| || ||| || || ||||| || Sbjct 113677 AACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 113618 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 || || ||||||||||| ||||| | ||||| ||||| Sbjct 113617 CCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 113576 >seq6 Length=38054609 Score = 116 bits (128), Expect = 5e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 ||| | |||||| | ||||| | || ||||| || || || |||||| | ||| | Sbjct 36616043 ACGTGGAGTTCCAGAGTTAAAGAGAGTCGGAGATGCATGAGTGAACCATCGCTGAGACAT 36616102 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63775 || || ||| |||| | |||||| || |||||| || |||||| || || | || | Sbjct 36616103 TAAATGGTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCT 36616162 Query 63776 CATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTT 63835 ||| | |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | Sbjct 36616163 CATGAGCATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCT 36616222 Query 63836 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || | ||| || || || || |||| ||| |||||| || |||||||| || Sbjct 36616223 CTCAAGAGTCTTGAATCCGAAGTAGTCATATTCAAAGTCCCGGTCGTAAATGAT 36616276 >seq8 Length=29345952 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 15956781 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 15956722 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||| ||| | ||||| || || || || | ||| | ||||| || || || ||| Sbjct 15956721 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 15956662 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | |||||||||||| || |||| || | |||||| ||| || || ||||| || Sbjct 15956661 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCGCACTCTTTCAATGTATCATATAT 15956602 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 15956601 TCCCTCAATGCTATCATCCTTCATG 15956577 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| | ||| || | || ||||| || || ||||||||| | | ||| | || || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || | || || || || ||||| || ||||| || || | || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 || ||||||||||| ||||| | ||| | | ||| || | ||| ||| | || | Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 19411475 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | || ||||| || || |||||||| | ||| | | || Sbjct 15956446 AGTTCCTGAATTGAAGAGAGTCGGAGATGCATGAGTAAACCACCGCTGAGACATCAAATG 15956387 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || || ||| || ||||| || || | || | ||| | Sbjct 15956386 GTAAGTTTTGATTGCGGAATCAATGTCCTCTTTGTGAATGCCGACAGAAACCCTCATGAG 15956327 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||| | ||| | | |||||| | ||| || | || | Sbjct 15956326 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGACCTCTCGAG 15956267 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || ||||| |||| || ||| || || || ||||| || Sbjct 15956266 AGTTTTGAACCCAAAGTAGTCATACTCAAAATCACGATCATAAATGAT 15956219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629740872470880