Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq18 123 3e-23 seq8 118 1e-21 seq159 109 7e-19 seq6 109 7e-19 >seq18 Length=77673080 Score = 123 bits (136), Expect = 3e-23 Identities = 385/586 (66%), Gaps = 10/586 (2%) Strand=Plus/Plus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||| || |||||||||||||| || || |||||||| || | |||||||| || Sbjct 68188277 ATCAGGCACGCGAAATCGCAGTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 68188336 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270 || | |||||||| || || ||||| || ||||| || || || ||| | | | || || Sbjct 68188337 GTCAACCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTACCGGA 68188395 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCACTG 36328 ||||| || ||||| || ||| ||||| | | ||||| | || | || || Sbjct 68188396 GAAGAAGATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGAC-- 68188453 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 ||| |||||| | ||||| | ||||||||| || || || || ||||| || Sbjct 68188454 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 68188513 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || ||||||| || | || || | || || | || || || | || || || Sbjct 68188514 GCGCGGAAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 68188573 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| || || || ||||| || || || || || || |||||||| | |||||| Sbjct 68188574 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 68188633 Query 36509 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 | | ||| || || | ||| || ||| || | || || || |||||||| Sbjct 68188634 GAGACCTGGACGTC-GGACATGAACCGTGAGGCGAGGTTCTCGAGGACGATTCCGTCGGA 68188692 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTAT 36626 ||| || || || || | || ||||| || || | || | | ||| || || | Sbjct 68188693 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 68188751 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 68188752 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 68188811 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 |||| || ||||| | |||||| | | ||||| ||||| || || Sbjct 68188812 CCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATTGGGAACAT 68188857 >seq8 Length=29345952 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 15956781 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 15956722 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 || ||||| ||||| || || || || ||||| | ||||| || || || ||| Sbjct 15956721 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 15956662 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | |||||||||||| || |||| || | |||||| ||| || |||||||| || Sbjct 15956661 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCGCACTCTTTCAATGTATCATATAT 15956602 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||||| || ||||||||| ||||| Sbjct 15956601 TCCCTCAATGCTATCATCCTTCATG 15956577 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | ||| || | || ||||| || || ||||||||| | | ||| | || || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | || || || || ||||| || ||||| || || | || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 || ||||||||||| ||||| | || | | ||| || | ||| ||| | || | Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 19411475 >seq159 Length=194462 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 113489 AGTTCCTGAATTGAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 113430 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | ||||| || || ||||| || || || || || | ||| | ||| | Sbjct 113429 GTAAGTTTGGATAGCAGAATCAATATCTTCTTTGTGGATGCCAACAGAGACCCTCATGAG 113370 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||| | || || | |||||| | ||| ||| | || | Sbjct 113369 CATGTGCTGAGGCCTTTCAACAACTTTCGCATTGACTTTCAAGAGGTATGATCTCTCAAG 113310 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 |||||| || ||||| |||| ||| ||| || || ||||| || || Sbjct 113309 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCGTAGATGAT 113262 >seq6 Length=38054609 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||||| | || ||||| || || || |||||| | ||| | || || Sbjct 36616049 AGTTCCAGAGTTAAAGAGAGTCGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 36616108 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 36616109 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 36616168 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||| | || | | |||||| | ||| ||| | || | Sbjct 36616169 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 36616228 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 ||| || || || || |||| ||| |||||| || |||||||| || Sbjct 36616229 AGTCTTGAATCCGAAGTAGTCATATTCAAAGTCCCGGTCGTAAATGAT 36616276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658092618098640