Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq1 102 7e-17 seq133 100 2e-16 seq18 82.4 7e-11 >seq3 Length=43957692 Score = 102 bits (112), Expect = 7e-17 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 || ||||| | || | || || || | |||| || ||||||||||| || || ||| Sbjct 31765830 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 31765771 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 | ||| || || || | ||| |||| |||||| || |||||||| ||||| || ||| Sbjct 31765770 CTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAAC 31765711 Query 21120 TGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 || | |||| | ||| || ||||| || |||||| || |||||| | |||||||| Sbjct 31765710 TG-CGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCA--A 31765654 Query 21179 GCACATAA--CGATGCGCCGATC 21199 ||| |||| ||| |||||||| Sbjct 31765653 GCAGATAATCTGATACGCCGATC 31765631 Score = 102 bits (112), Expect = 7e-17 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 || ||||| | || | || || || | |||| || ||||||||||| || || ||| Sbjct 31809911 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 31809970 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 | ||| || || || | ||| |||| |||||| || |||||||| ||||| || ||| Sbjct 31809971 CTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAAC 31810030 Query 21120 TGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 || | |||| | ||| || ||||| || |||||| || |||||| | |||||||| Sbjct 31810031 TG-CGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCA--A 31810087 Query 21179 GCACATAA--CGATGCGCCGATC 21199 ||| |||| ||| |||||||| Sbjct 31810088 GCAGATAATCTGATACGCCGATC 31810110 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 21035 GGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGA 21094 ||| ||||||||||| || || || ||||| || || || | ||| |||| || || || Sbjct 40985394 GGCAATGTTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGA 40985453 Query 21095 CAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 ||||| || || ||||||||||| || | ||| |||||||| || |||||| | Sbjct 40985454 GAGCTCTCCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAG 40985513 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | ||||| | || ||||| || |||| | || || ||||| Sbjct 40985514 CTTAAGGTCAGAAGGATTCCAAGCTGACATTATTATCCGGCGATC 40985558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 21035 GGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGA 21094 ||| ||||||||||| || || || ||||| || || || | ||| |||| || || || Sbjct 41004372 GGCAATGTTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGA 41004431 Query 21095 CAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 ||||| || || ||||||||||| || | ||| |||||||| || |||||| | Sbjct 41004432 GAGCTCTCCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAG 41004491 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | ||||| | || ||||| || |||| | || || ||||| Sbjct 41004492 CTTAAGGTCAGAAGGATTCCAAGCTGACATTATTATCCGGCGATC 41004536 >seq1 Length=45320942 Score = 102 bits (112), Expect = 7e-17 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 || ||||| | || | || || || | |||| || ||||||||||| || || ||| Sbjct 31775404 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 31775463 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 | ||| || || || | ||| |||| |||||| || |||||||| ||||| || ||| Sbjct 31775464 CTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAAC 31775523 Query 21120 TGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 || | |||| | ||| || ||||| || |||||| || |||||| | |||||||| Sbjct 31775524 TG-CGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCA--A 31775580 Query 21179 GCACATAA--CGATGCGCCGATC 21199 ||| |||| ||| |||||||| Sbjct 31775581 GCAGATAATCTGATACGCCGATC 31775603 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||| | | | || || |||| ||| ||| |||||||| || || || || Sbjct 9628181 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAAAGGTACACCAAG 9628122 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| || || || | ||| |||| || || || ||||| || || |||||||| Sbjct 9628121 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCAACGTAAAA 9628062 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 |||| || | ||| || ||||| || |||||| || ||||| | || ||||| || Sbjct 9628061 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 9628002 Query 21179 GCACATAACGATGCGCCGATCGT 21201 |||| | || |||||||||| Sbjct 9628001 AGACATTATAATCCGCCGATCGT 9627979 >seq133 Length=227095 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||| ||||||| | | | || || |||| ||| ||| ||||||||||| || || || Sbjct 171952 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 171893 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| || || || | ||| |||| || || || ||||| || || |||||||| Sbjct 171892 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 171833 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 |||| || | ||| || ||||| || |||||| || ||||| | || ||||| || Sbjct 171832 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 171773 Query 21179 GCACATAACGATGCGCCGATCGT 21201 |||| | || || ||||||| Sbjct 171772 CGACATTATAATCCGTCGATCGT 171750 >seq18 Length=77673080 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 || ||||| | || | || || || | |||| || ||||||||||| || |||||| Sbjct 7477197 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCGAGG 7477256 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 ||||| || || || | ||| |||| || || || |||||||| ||||||| ||| Sbjct 7477257 CCCATATCCGCTGAACGCTGATACATTTGACACGAGAGCTCCCCGTCCACCACGTAGAAC 7477316 Query 21120 TGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 || || | ||| || ||||| || |||||| | ||| || | || ||||| || Sbjct 7477317 TGTGCGAACATGTGGCATGGAGGAAGCGCCATCAACTTGAGATCAGAAGGATTCCAAGCC 7477376 Query 21180 CACATAACGATGCGCCGATC 21199 | | | ||| || ||||| Sbjct 7477377 GATAATATGATACGACGATC 7477396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427725189034080