Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq16 156 6e-33 seq18 149 9e-31 seq159 118 2e-21 seq8 118 2e-21 seq6 118 2e-21 >seq16 Length=18736220 Score = 156 bits (172), Expect = 6e-33 Identities = 248/349 (71%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || ||||| ||||||||||| || |||||||| || || |||||||| || Sbjct 836960 ATCAGGCACGCGAAGTCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 836901 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 ||||| || ||||| || |||||||| || ||||| || || || ||| || ||| || Sbjct 836900 GTGAGCCCCGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTCCCCGA 836842 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 |||||||| ||||| || ||||| || || | ||||| || | ||| |||| Sbjct 836841 GAAGAAGATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCAAA---GGC-CTGTG 836786 Query 50133 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 || || |||||| | ||||| | ||||||||| || || || ||||| || | Sbjct 836785 ATCCGTCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGA 836726 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | || ||||||| || | || || |||| || | |||||||| | || |||| Sbjct 836725 TCGCGCGGAAGAGATGGTCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGAC 836666 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 | ||||| || || || ||||| || || || ||||| || |||||||| Sbjct 836665 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAA 836617 >seq18 Length=77673080 Score = 149 bits (164), Expect = 9e-31 Identities = 412/622 (66%), Gaps = 10/622 (2%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || |||||||||||||| || || |||||||| || || |||||||| || Sbjct 68188277 ATCAGGCACGCGAAATCGCAGTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 68188336 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 || | |||||||| || || ||||| || ||||| || || || ||| || || || Sbjct 68188337 GTCAACCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTACCGGA 68188395 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTGGCGCTG 50130 |||||||| ||||| || || ||||| || | ||||| | || |||| | Sbjct 68188396 GAAGAAGATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGAC-- 68188453 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 ||| |||||| | ||||| | ||||||||| || || || || || || || Sbjct 68188454 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 68188513 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || ||||||| || | || || | || || | || || || | || || || Sbjct 68188514 GCGCGGAAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 68188573 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || || ||||| || || || ||||| || |||||||| | |||||| Sbjct 68188574 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 68188633 Query 50311 GTAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 | | ||| || || | ||| || ||| || | || || || |||||||| Sbjct 68188634 GAGACCTGGACGTC-GGACATGAACCGTGAGGCGAGGTTCTCGAGGACGATTCCGTCGGA 68188692 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTAT 50428 ||| || || || || | || ||||| || || || || | | ||| || || | Sbjct 68188693 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 68188751 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 68188752 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 68188811 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 50548 |||| || ||||| | |||||| | | |||||||||||||| || ||||| | || Sbjct 68188812 CCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATTGGGAACATGCAGAATCTGTCTG 68188871 Query 50549 GATTTGGTGCAAGGATCGGTTC 50570 | |||| | ||| | ||| || Sbjct 68188872 GGGTTGGGGTAAGAAGCGGCTC 68188893 >seq159 Length=194462 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | || |||||||| || ||||||||| | ||||| || || Sbjct 113489 AGTTCCTGAATTGAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 113430 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | ||||| || || ||||| || || || || || | ||| | ||| | Sbjct 113429 GTAAGTTTGGATAGCAGAATCAATATCTTCTTTGTGGATGCCAACAGAGACCCTCATGAG 113370 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | || ||| | |||||| | ||| ||| | || | Sbjct 113369 CATGTGCTGAGGCCTTTCAACAACTTTCGCATTGACTTTCAAGAGGTATGATCTCTCAAG 113310 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| ||| ||| || || ||||| || || Sbjct 113309 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCGTAGATGAT 113262 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 113797 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 113738 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || | |||||| || || || || |||||| ||||| || || |||||| Sbjct 113737 ATTAGAAGCACCATTAGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGA 113678 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | |||||| ||||| || |||| || | ||| || ||| || |||||||| || Sbjct 113677 AACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 113618 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 113617 CCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 113576 >seq8 Length=29345952 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 15956781 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 15956722 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 || ||||| ||||| || || || || ||||| | ||||| || || || ||| Sbjct 15956721 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 15956662 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | |||||||||||| || |||| || | |||||| ||| || |||||||| || Sbjct 15956661 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCGCACTCTTTCAATGTATCATATAT 15956602 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||||| ||||||||||| ||||| Sbjct 15956601 TCCCTCAATGCTATCATCCTTCATG 15956577 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||| || | || ||||| || || ||||||||| | | ||||| || || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | || || || || ||||| || ||||| || || | || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || ||||||||||| ||||| | || || | ||| || | ||| ||| | || | Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 19411475 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | || ||||| || || |||||||| | ||||| | || Sbjct 15956446 AGTTCCTGAATTGAAGAGAGTCGGAGATGCATGAGTAAACCACCGCTGAGACATCAAATG 15956387 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || || ||| || ||||| || || | || | ||| | Sbjct 15956386 GTAAGTTTTGATTGCGGAATCAATGTCCTCTTTGTGAATGCCGACAGAAACCCTCATGAG 15956327 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | || || | |||||| | ||| || | || | Sbjct 15956326 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGACCTCTCGAG 15956267 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| || ||| || || || ||||| || Sbjct 15956266 AGTTTTGAACCCAAAGTAGTCATACTCAAAATCACGATCATAAATGAT 15956219 >seq6 Length=38054609 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||||| | || ||||| || || || |||||| | ||||| || || Sbjct 36616049 AGTTCCAGAGTTAAAGAGAGTCGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 36616108 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 36616109 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 36616168 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | || || | |||||| | ||| ||| | || | Sbjct 36616169 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 36616228 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || || || || |||| ||| |||||| || |||||||| || Sbjct 36616229 AGTCTTGAATCCGAAGTAGTCATATTCAAAGTCCCGGTCGTAAATGAT 36616276 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | || | ||| || | ||| | || | || |||||||| ||||||| Sbjct 36615723 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACCA 36615782 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||| ||||| || || || || |||||| | ||||| || || || || Sbjct 36615783 TTAGATTCTCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGAA 36615842 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || ||||| || |||| || | || || ||| || |||||||| || Sbjct 36615843 ACACCAATACCCCCAGCTGATTTACTTATAACCGCACACTCTTTCAATGTATCATAAATC 36615902 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 36615903 CCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 36615943 Score = 86.0 bits (94), Expect = 9e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 79078 AATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAA 79137 || ||||| ||| | ||||| || |||||| || || | |||||||||| || | | Sbjct 36613925 AAGACTCTGCGACTATAAATGTTTGAGGTATACGGCTCAAAACATTCATTATTCCCAAGA 36613984 Query 79138 ATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 79197 || || ||||| || |||||||| ||||| || || | | |||||||| || | | Sbjct 36613985 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACTAAAAGAGAATTTCTAATTCCAT-T 36614043 Query 79198 GATCTGATTT-TATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCA 79256 || | | ||||| | |||| |||| ||||| |||| || || | |||||||| Sbjct 36614044 CTTCGAAATCATATCTCTGAGAGCAGCCCAGTCCCAGCGATCCGAAGGAATCACATTCCA 36614103 Query 79257 AAGATCATATTGTAGAATACC 79277 | ||| |||||||||||| Sbjct 36614104 CATGTCAGGTTGTAGAATACC 36614124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718181296903440