Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq16 150 2e-31 seq18 143 4e-29 seq8 118 1e-21 >seq16 Length=18736220 Score = 150 bits (166), Expect = 2e-31 Identities = 416/627 (66%), Gaps = 17/627 (3%) Strand=Plus/Minus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||| || ||||| ||||||||||| || || ||||| || | |||||||| || Sbjct 836960 ATCAGGCACGCGAAGTCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 836901 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 ||||| || ||||| || |||||||| || ||||| || || || ||| | | | || || Sbjct 836900 GTGAGCCCCGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTCCCCGA 836842 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||||| ||||| || ||||| || | | ||||| || | ||| |||| Sbjct 836841 GAAGAAGATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCAAA---GGC-CTGTG 836786 Query 42238 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 || || |||||| | ||||| | ||||||||| || || || ||||| || | Sbjct 836785 ATCCGTCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGA 836726 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | || ||||||| || | || || |||| || | || ||||| | || |||| Sbjct 836725 TCGCGCGGAAGAGATGGTCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGAC 836666 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || || || ||||| || || || ||||| || |||||||| | ||||| Sbjct 836665 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 836606 Query 42414 CGGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 ||| ||||| || || | ||| || || || | || ||| || || ||||| Sbjct 836605 CGGAGACCTGGACGTC-GGACATGAAACGAGAGGCGAGGTTCTCGAGGACGATCCCGTCG 836547 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---- 42528 || || || || || | || ||||| | || | || |||| ||| | Sbjct 836546 GATGCGGCGAAGAAGGCGAGGACGTGTTTGACGAAGTGGCGCTC-TCCGTCGTTGAGATT 836488 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 || | ||| || | |||| || | || ||||| || | ||||| || || || Sbjct 836487 TTCCTCCCAGTCGCGGGGGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGC 836428 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 ||| || || || ||||| | |||||| | | | || || || ||||| || ||||| Sbjct 836427 TTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGTGGATCGGGAACATGCAGAATCT 836368 Query 42649 ATTTGGATTTGGTGCAAGGATCGGTTC 42675 | ||| |||| | |||| ||| || Sbjct 836367 GTCTGGGGTTGGGGTCAGGAGCGGCTC 836341 >seq18 Length=77673080 Score = 143 bits (158), Expect = 4e-29 Identities = 411/622 (66%), Gaps = 10/622 (2%) Strand=Plus/Plus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||| || |||||||||||||| || || || ||||| || | |||||||| || Sbjct 68188277 ATCAGGCACGCGAAATCGCAGTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 68188336 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 || | |||||||| || || ||||| || ||||| || || || ||| | | | || || Sbjct 68188337 GTCAACCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTACCGGA 68188395 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCACTG 42235 |||||||| ||||| || ||| ||||| | | ||||| | || | || || Sbjct 68188396 GAAGAAGATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGAC-- 68188453 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 ||| |||||| | ||||| | ||||||||| || || || || || || || Sbjct 68188454 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 68188513 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || ||||||| || | || || | || || | || || || | || || || Sbjct 68188514 GCGCGGAAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 68188573 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || ||||| || || || ||||| || |||||||| | |||||| Sbjct 68188574 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 68188633 Query 42416 GTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 | ||||| || || | ||| || ||| || | || ||| || |||||||| Sbjct 68188634 GAGACCTGGACGTC-GGACATGAACCGTGAGGCGAGGTTCTCGAGGACGATTCCGTCGGA 68188692 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTAT 42533 ||| || || || || | || ||||| || || | || |||| ||| | || | Sbjct 68188693 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 68188751 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| || | || | || | || ||||| || | ||||| || || || || | Sbjct 68188752 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 68188811 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTG 42653 |||| || ||||| | |||||| | | ||||| |||||||| || ||||| | || Sbjct 68188812 CCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATTGGGAACATGCAGAATCTGTCTG 68188871 Query 42654 GATTTGGTGCAAGGATCGGTTC 42675 | |||| | ||| | ||| || Sbjct 68188872 GGGTTGGGGTAAGAAGCGGCTC 68188893 >seq8 Length=29345952 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 15956781 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 15956722 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 || |||| ||||| || || || || ||||| | ||||| || ||| || ||| Sbjct 15956721 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 15956662 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | |||||||||||| || |||| || | |||||| ||| || |||||||| || Sbjct 15956661 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCGCACTCTTTCAATGTATCATATAT 15956602 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||| || ||||||||| ||||| Sbjct 15956601 TCCCTCAATGCTATCATCCTTCATG 15956577 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| | ||| || | || ||||| || || ||||||||| | | ||||| || || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || | || || || || ||||| || || || || || | || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 |||||||||||||| ||||| | || || | ||| || | ||| ||| | || | Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 19411475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671057438466960