Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 170 3e-37 seq6 145 1e-29 seq2 138 2e-27 seq16 116 5e-21 seq7 86.0 9e-12 seq15 84.2 3e-11 >seq18 Length=77673080 Score = 170 bits (188), Expect = 3e-37 Identities = 382/560 (68%), Gaps = 18/560 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| |||||||||| ||||| | ||| || ||||| || Sbjct 68188833 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 68188774 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| ||||| ||| ||||||| || | | || ||||| | || || Sbjct 68188773 TCCCAGGACACACGCGACTGGGAGAATC---TCAACGACGGAGAGCGCCACTTCATCAAA 68188717 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| |||||| ||||||||| ||| || || |||| Sbjct 68188716 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAACCTCGCCTCACGG 68188657 Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 ||| | || || | ||| |||| | || || || ||||| ||||| ||| || Sbjct 68188656 TTCATGTCCGACGTCCAGGTCTCC-GAGGCG-CGCGCCTTCTACGGGTTCCAGATCGCGA 68188599 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 | |||||| | ||||| || |||||| ||| | |||| |||||| || | | Sbjct 68188598 TCGAGAACATCCACTCCGAGATGTACAGCCTCCTGTTAGACACGTACATCAAGGA-CAAC 68188540 Query 125317 AACGTAA---ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || | | || ||| ||||| ||| ||||| || | || | | || |||| Sbjct 68188539 AAGGAGAGGGAC-CAT-CTCTTCCGCGCGATCGAGACCATCCCCTGCGTCGCGAAGAAGG 68188482 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | ||||||| || ||||||||||| | || ||| |||||| || | |||| Sbjct 68188481 CCCAATGGGCCATGACGTGGATCGATGGGTCCCAGACTTT---CGCCGAGAGGATCGTGG 68188425 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTC 125492 | ||||| ||| || || |||||||| || ||||| || ||| | ||||| |||||| Sbjct 68188424 CCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGCTC 68188366 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || ||||||||||| |||| | |||||| | || || ||||||| Sbjct 68188365 AAGAAGCGAGGGCTCATGCCCGGGTTGACCTTCTCCAACGAGCTGATCTCGAGAGACGAA 68188306 Query 125553 GGCCTACACTGTGACTTTGC 125572 ||||| ||||| || || || Sbjct 68188305 GGCCTTCACTGCGATTTCGC 68188286 >seq6 Length=38054609 Score = 145 bits (160), Expect = 1e-29 Identities = 374/558 (67%), Gaps = 14/558 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| ||||||| || ||||| | |||||| |||||||| Sbjct 29819607 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTCGATCTC 29819666 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| | ||| ||| ||||||| || | | || ||||| | || || Sbjct 29819667 TCCCAAGACACTCGCGACTGGGAGAATC---TCAACGACGGAGAGCGCCACTTCATCAAA 29819723 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| ||||| |||||||| || ||||| | || Sbjct 29819724 CACGTCCTCGCCTTCTTCGCCGCATCCGACGGAATCGTTTTAGAGAATCTCGCCTCCCGG 29819783 Query 125199 TTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || || || | | || | |||| | ||||| || ||||| ||||| ||| | Sbjct 29819784 TTCATGTCC-GACGTG-CAAGTCTCCGAGGCG-CGTGCCTTCTACGGGTTCCAGATCGCG 29819840 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 |||||||| | ||||| || |||||| ||| | |||| |||||| ||| Sbjct 29819841 ATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGTACATCAAGGATAAT 29819900 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 || | || ||||| ||| || || || | || | | || ||||| Sbjct 29819901 AAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATACCTTGCGTCGCGAAGAAGGCC 29819960 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 ||||||| || ||||||||| | || ||| |||||| || | ||||| Sbjct 29819961 CAATGGGCCATGACGTGGATCGACGGATCTCAGACTTT---CGCCGAGAGGATCGTGGCG 29820017 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAA 125494 || || ||| || || |||||||| || || || || ||| | ||||| ||||| || Sbjct 29820018 TTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CGATCTTCTGGCTGAA 29820076 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || |||||||| || | || | |||||||| || ||||||||||| || Sbjct 29820077 GAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGG 29820136 Query 125555 CCTACACTGTGACTTTGC 125572 ||| ||||| ||||| || Sbjct 29820137 CCTTCACTGCGACTTCGC 29820154 >seq2 Length=25468329 Score = 138 bits (152), Expect = 2e-27 Identities = 391/587 (67%), Gaps = 23/587 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| || | | | || ||||| |||||||| || || | |||||||| | Sbjct 22244295 TGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 22244236 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| || ||||| || ||| | ||| ||| |||||||| | | | Sbjct 22244235 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGACCAACCTCAACG 22244176 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || || ||| | | |||||||| |||| |||||| ||||||| Sbjct 22244175 ACGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCG 22244116 Query 125176 TCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| ||||| | || ||| | || || | ||| |||| | ||||| Sbjct 22244115 TCCTCGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCTCC-GAGGCG-CGTGC 22244058 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTAC----TCTACAC 125289 || ||||| ||||| ||| ||||||||| | |||||||| |||||| ||| Sbjct 22244057 CTTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCT---- 22244002 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAA---ACACATGCTCTTTAACGCAATCG 125346 || | || | |||||| || | ||| | | || ||| ||||| ||| || | Sbjct 22244001 TGCTAGATACGTACATCAAGGA-CAACAAGGAGAGGGAC-CAT-CTCTTCCGCGCGATTG 22243945 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || | || | | || ||||| ||||||| | ||||||||| | Sbjct 22243944 AGACCATCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCTTGAAGTGGATCGACGGATCTC 22243885 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 || ||| |||||| || | ||||| ||||| ||| || || |||||||| || | Sbjct 22243884 AGACTTT---CGCCGAGAGGATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCG 22243828 Query 125467 GTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | || || ||| ||||||| |||||||||||||| || |||||||| || || || | Sbjct 22243827 GAAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTC 22243769 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || || ||||| ||||| ||||| ||||| || Sbjct 22243768 TCCAACGAGCTGATCTCGCGGGACGAAGGCCTTCACTGCGACTTCGC 22243722 >seq16 Length=18736220 Score = 116 bits (128), Expect = 5e-21 Identities = 380/581 (65%), Gaps = 11/581 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| || | | | || ||||| |||||||| || || | |||||||| | Sbjct 836378 TGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 836437 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| || ||||| || ||| | |||| ||| |||||| | | | | Sbjct 836438 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACCCCCGCGACTGGGAGGAAAATCTCAACG 836497 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || | ||| | | |||||||| |||| ||||| || |||| Sbjct 836498 ACGGAGAGCGCCACTTCGTCAAACACGTCCTCGCCTTCTTCGCCGCATCCGACGGGATCG 836557 Query 125176 TCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| || || | || ||| | || || | ||| |||| || || Sbjct 836558 TCCTCGAGAACCTCGCCTCTCGTTTCATGTCCGACGTCCAGGTCTCC-GAGGCC-CGCGC 836615 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| ||| ||| |||||| | ||||| || |||||| | ||| | Sbjct 836616 CTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGTT 836675 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 || | ||||| ||| | | || ||||| ||| ||||| ||| | Sbjct 836676 AGATACTTACATCAAGGATAATAGAGAGAGGGACCATCTCTTCCGCGCGATCGAGACGAT 836735 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATG-ACGACAAGTCTT 125412 || | | || ||||| ||||||| || ||||||||| | | ||| | ||| Sbjct 836736 CCCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGACGGATCACAGGCCTT 836795 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 | |||| || | ||||| || || ||| || || |||||||| ||||| || | Sbjct 836796 TG----CCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCGGGGAGCT 836851 Query 125473 T-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | ||| | ||||| |||||||||||||| || |||||||| || || || | ||| Sbjct 836852 TCTGCT-CGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAAC 836910 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| | || || ||||||| ||||| ||||| ||||| || Sbjct 836911 GAGCTGATCTCGAGAGACGAAGGCCTGCACTGCGACTTCGC 836951 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 ||| || ||| | || || |||||| ||| || | |||||||| || || || || Sbjct 7908821 CGCGGAGAGAATCGTCGCCTTCGCCTGCGTCGAAAGGATCTTCTTCTCCGGCAGCTTCTG 7908880 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 | ||||| | ||||||||| || || |||||||| || |||| | |||||||| Sbjct 7908881 TACGATCTTCTTGCTCAAGAAACGAGGGCTCATGCCTGGTTTGACCTTCTCCAACGAGTT 7908940 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGA 125566 || ||||||||||| ||| | |||||||| Sbjct 7908941 GATCTCTCGAGACGAAGGCTTGCACTGTGA 7908970 >seq7 Length=28547970 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 |||||||| |||||||||||| | || || ||||| || |||| | |||||| || Sbjct 8687208 GCCATCTTCTGGCTCAAGAAGAGAGGTCTTATGCCTGGTTTGACTTTCTCAAACGAGCTT 8687149 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| |||||||||| || |||||||||||||| Sbjct 8687148 ATATCGAGAGACGAGGGGCTCCACTGTGACTTTGC 8687114 >seq15 Length=50573455 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 125457 TTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGA 125516 || |||| || || ||| |||||||| ||||| |||||| | || || ||||| || Sbjct 6692375 TTTTTTTGGGACAGCTTTTGTGCCATCTTCTGGCTTAAGAAGAGAGGTCTTATGCCGGGT 6692316 Query 125517 CTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || | |||||| ||||||| ||||||||||||| |||||||||||||| Sbjct 6692315 TTAACCTTCTCGAACGAGCTTATATCGAGAGACGAGGGCCTCCACTGTGACTTTGC 6692260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740968920462960