Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 3e-15 seq18 89.7 4e-13 seq1 89.7 4e-13 seq6 87.8 1e-12 seq10 86.0 5e-12 seq12 82.4 6e-11 >seq13 Length=83567108 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || || ||||| || || || ||||| |||||||| || ||| | | | | || Sbjct 62924099 TAAGACCAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGCAAGAGTACGCCCATC 62924040 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||| || ||||| | ||||| | || ||||| ||||| || || || || Sbjct 62924039 TTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATACCCTCCTTATC 62923980 Query 15271 ACAAATTTTGCTCTTTACAATT-TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 ||| || | ||||| ||| || |||||||| | | || || || || ||||||| Sbjct 62923979 CTGAATCTT-CGCTTTAACATTGTCGATGGTATCTGAACTCTCCACCTCCAAAGTAATGG 62923921 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| ||| || ||||| || |||||| Sbjct 62923920 TTTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 62923886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-G 15193 |||| || | || | ||| || |||||||| || || || || || ||||||||||| | Sbjct 62907610 TGCCTCCACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATCTG 62907551 Query 15194 CTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253 | || | | | || || | |||||||||||| | || | |||||| ||||| | Sbjct 62907550 CCAAGG-TGCGACCATCCTCGAGCTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGT 62907492 Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 || || || || || || |||||| ||| || | || || || ||| | || Sbjct 62907491 GGGATCCCCTCCTTATCTTGGATTTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCC 62907432 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || ||||| || || ||||| || || ||||| || ||||| Sbjct 62907431 ACCTCTAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACAAAGATCTGCAT 62907382 Score = 82.4 bits (90), Expect = 6e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTT-TGTATGTTGTAATCGCT 15195 |||||||| ||||| || | | || ||| || || |||||| || |||||||| || Sbjct 11001908 CCACCTCTGAATCTCAAGATGAGATAAAGAGTAGACTCTTTTCTGGATGTTGTAGTCCGC 11001849 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| ||| ||||||| | || || || || |||||||||||||||| || ||| Sbjct 11001848 TAGGGTTCGGCCGTCTTCAAGCTGCTTACCGGCAAATATCAAACGTTGTTGATCTGGTGG 11001789 Query 15256 AATTCCTTCTTTGTC 15270 || ||||||||||| Sbjct 11001788 TATACCTTCTTTGTC 11001774 >seq18 Length=77673080 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || ||||| ||||||||||| ||| | | ||||||| | || Sbjct 62463319 ATGGAGCGTGGACTCCTTTTGAATGTTGTAATCCGCAAGAGTGCGTCCGTCTTCGAGCTG 62463260 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | || | | || ||||| ||| || ||||| ||||| ||| || Sbjct 62463259 CTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTT 62463200 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || ||||| || | || || || || || |||||||| || | Sbjct 62463199 TGC-CTTGACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTTTTGCCGG 62463141 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || |||||||| |||||| Sbjct 62463140 TGAGGGTCTTGACAAAAATCTGCATA 62463115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| ||||| || || || || || ||||||||||| | | | || | || || Sbjct 62463781 AACTAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTC 62463722 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| |||||| | || | | |||||||| || || ||||| ||||| Sbjct 62463721 AAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTG 62463662 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| | || || || || | || || || ||||| || || || Sbjct 62463661 AATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTT 62463602 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| ||| || ||||| ||||||||| Sbjct 62463601 GCCTGTCAAAGTCTTCACAAAGATTTGCATA 62463571 >seq1 Length=45320942 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || || |||||||| ||| ||| |||| | || || || || Sbjct 18861814 ATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTTCTTCCATCCTCCAACTG 18861873 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| || | || | | || ||||| ||| ||||| || || || || || Sbjct 18861874 CTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTT 18861933 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||||||| |||| || || || || || || || || || Sbjct 18861934 GGCCTTAACGTTGTCGATGGTATCGGAGCTTTCAACCTCCAAAGTGATCGTCTTTCCGGT 18861993 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAA 15377 ||||||||| ||||| || ||| || ||||| ||||| Sbjct 18861994 CAGAGTTTTAACAAAGATCTGC--ATCTGAAATTAAAA 18862029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || || || |||||||||||| | | || | ||||| Sbjct 18861353 ACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCCATCTTCC 18861412 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || |||||| | || | | || |||||| ||||| || || ||||| Sbjct 18861413 AATTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGG 18861472 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || || | || ||||| ||| | | || || |||| || || || || Sbjct 18861473 ATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGTCTTT 18861532 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || || || |||||||| Sbjct 18861533 CCTGTCAAAGTCTTGACGAAGATTTGCAT 18861561 >seq6 Length=38054609 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || ||||| || |||||||| || |||| |||| | || Sbjct 21965371 AAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCTAGAGTTCTTCCATCC 21965312 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| || | ||||| | || ||||| || ||||| || ||||| Sbjct 21965311 TCCAACTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCT 21965252 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| | || || || || | || || || || ||||| || Sbjct 21965251 TGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAAAGTAATCGTC 21965192 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||| || ||||||||||||||| Sbjct 21965191 TTCCCCGTCAAAGTCTTGACAAAAATTTGCATA 21965159 >seq10 Length=22354415 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || || || ||||||||||| || | | | || || Sbjct 21870548 AACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAATCTGCAAGCGTGCGACCATCCTC 21870489 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| |||||| | || | | |||||||| ||||| ||||| ||||| Sbjct 21870488 AAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTG 21870429 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| | || || || || |||| || || |||||||| || || Sbjct 21870428 AATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTT 21870369 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || ||||| |||||||| Sbjct 21870368 GCCTGTCAAAGTCTTCACAAATATTTGCAT 21870339 >seq12 Length=60369500 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || || || ||||||||||| ||| | | | || Sbjct 48264983 AAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCC 48264924 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| ||||| ||| | ||||| | || ||||| ||||| || |||||||| Sbjct 48264923 TCGAGTTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCT 48264864 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| || ||| | || ||||| ||| | || || || || || || || Sbjct 48264863 TGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATAGTC 48264804 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| |||||||| |||||| Sbjct 48264803 TTTCCCGTCAATGTTTTAACAAAAATCTGCATA 48264771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362136180580986