Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 8e-16 seq13 93.3 3e-14 seq6 93.3 3e-14 seq5 89.7 4e-13 seq1 89.7 4e-13 >seq9 Length=62778564 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | ||||||| ||| | |||||||||||||| || ||||| |||||| Sbjct 30497383 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATGTTGTAGTCCGCC 30497324 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| || |||| || || || || || ||| | || | |||||||| ||| || Sbjct 30497323 AATGTTCTGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGA 30497264 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| || || || || | | | | || ||| |||| Sbjct 30497263 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCAATTGTGTCGGAGCTCTCCACC 30497204 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||| || ||||| || || |||||||| || ||||| Sbjct 30497203 TCTAGAGTAATGGTCTTCCCTGTCAATGTCTTGACAAAGATCTGCAT 30497157 >seq13 Length=83567108 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||| || ||||| |||||||| |||| |||| || ||||| Sbjct 62924326 AAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCAGCCAGTGTTCTGCCGTCC 62924267 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || ||||| || || ||| | || ||||||||||| || || | ||| || ||||| Sbjct 62924266 TCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTC 62924208 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || |||||||| || | ||| || |||| |||||||| || || Sbjct 62906894 GTCGACTCCTTCTGGATGTTGTAATCAGCGAGGGTTCTGCCGTCTTCCAGCTGCTTTCCG 62906835 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| |||||||||||| ||| | |||||| ||||| || || ||| Sbjct 62906834 GCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTA 62906775 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || ||| ||| |||| ||| ||||| || || || | ||| Sbjct 62906774 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTC 62906715 Query 19025 TTGACAAAAATTTGCAT 19041 || || || || ||||| Sbjct 62906714 TTAACGAAGATCTGCAT 62906698 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 |||||||| || | | |||| ||| | ||| |||||||| || || ||||||||||| Sbjct 48378063 TCCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 48378122 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | ||| | |||| |||||||| || || || | || |||| |||||||||| || Sbjct 48378123 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGG 48378182 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | ||| || ||||| || || ||| || | | ||| || || | || Sbjct 48378183 GATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCTGATGATTCGAC 48378242 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||| || || || || |||| ||||| ||||| || |||||||| Sbjct 48378243 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 48378293 >seq6 Length=38054609 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | |||||||||||| || ||||||||||| |||| || || |||| Sbjct 21964915 AAGACCAGGTGGAGCGTAGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCT 21964856 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||| || || || | || || ||||||||||| || | ||| || ||||| Sbjct 21964855 TCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 21964796 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATG 19006 ||| || ||| || | | ||| || | ||| || ||| || | ||| ||| Sbjct 21964795 TGAATCTTGGCTTTAACGTTGTCGATGGT---GTCAGAGCTTTCCACCTCAAGGGTGATG 21964739 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || || || || | |||||| ||||| || ||||| | ||| Sbjct 21964738 GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGAAA 21964698 >seq5 Length=38841276 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||| | |||||||||||| || || ||||| || ||| Sbjct 24217362 CCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 24217303 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||| ||| || || || | ||||| |||||||||||| || Sbjct 24217302 AAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGG 24217243 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || ||| || || || | | ||| || ||| |||| Sbjct 24217242 ATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACC 24217183 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || | |||||| || || || ||||| Sbjct 24217182 TCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 24217136 >seq1 Length=45320942 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||| | |||||||||||| ||||| |||||||| ||| Sbjct 18861335 CCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCC 18861394 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | || |||| || || || || | ||||| |||||||| || || Sbjct 18861395 AAGGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCGGGAGGA 18861454 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||| ||| || | | | | || ||| | |||| Sbjct 18861455 ATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACC 18861514 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || ||||| ||||| ||||| || |||||||| Sbjct 18861515 TCTAGCGTGATCGTCTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 18861561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414523557301924