Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 4e-12 seq10 82.4 5e-11 >seq13 Length=83567108 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| ||||||| ||||||||| | || | ||| |||| Sbjct 39908339 CATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTT 39908280 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || |||||| | ||| ||||| | |||||| || | || | Sbjct 39908279 TGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGA 39908220 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || || || ||||||||||| |||||||| Sbjct 39908219 TAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 39908183 >seq10 Length=22354415 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | ||| | ||| |||||| ||| ||||| || || ||||| Sbjct 21870110 ACCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAATCCGC 21870051 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| |||| || || ||||| || || | | |||||||| | | Sbjct 21870050 GAGAGTG-CGACCATCCTCCAGCTGCTTCCCTGCGAAGATGAGTCTCTGCTGGTCTGGTG 21869992 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| || || ||| ||| |||||| | ||| || || | ||| | Sbjct 21869991 GGATGCCTTCCTTCTCCTGAATCTTTGCTTTGACGTTGTCAATCGTGTCAGAGCTCTCAA 21869932 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||||||||||||||| || ||||| ||||| || ||||| Sbjct 21869931 CCTCCAAGGTAATTGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 21869883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354735459738408