Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq15 82.4 7e-11 >seq15 Length=50573455 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| |||||||| | || || ||||| ||| |||||||| || || |||| Sbjct 6692256 ACAAGCAAAGTCACAGTGGAGGCCCTCGTCTCTCGATATAAGCTCGTTCGAGAAGGTTAA 6692315 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA-CGAACCCGaaaaaa 13268 |||||||||||| |||| || |||| ||| || || ||| ||| | ||| |||||| Sbjct 6692316 ACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTGTCCCAAAAAAA 6692375 Query 13269 aT 13270 || Sbjct 6692376 AT 6692377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430931208179892