Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq9 325 5e-84 seq14 197 2e-45 seq8 104 3e-17 >seq9 Length=62778564 Score = 325 bits (360), Expect = 5e-84 Identities = 457/635 (72%), Gaps = 11/635 (2%) Strand=Plus/Minus Query 138250 CAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGG 138309 ||||| ||||||||||||| || ||||| || || || || || || ||||| | | Sbjct 56234944 CAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCCACTAG 56234885 Query 138310 GTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTC---C 138366 ||||||| ||||||||||| || |||||||| || || || || |||||| | Sbjct 56234884 GTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCC 56234825 Query 138367 TGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAG 138426 | || |||| |||||||| |||| ||| | || || | |||||| ||||||| | | Sbjct 56234824 TCTTTTTCCA--AGGGTTTC-ATAATTGGGCACTGAATTCATTTCATTTGATGGGAATTG 56234768 Query 138427 CAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAA-ATACT 138485 | ||| | ||||| | |||||| | || |||||| |||||||||| ||||||| || | Sbjct 56234767 CCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATTTT 56234708 Query 138486 TTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAA 138545 || | |||| |||| || |||||| || || ||| | || | ||||| ||| Sbjct 56234707 TTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCGAA 56234648 Query 138546 GAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTT 138605 ||||| ||||||||||| || |||||||| | ||||| | ||||||||| ||||||| Sbjct 56234647 GAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTT 56234588 Query 138606 AGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACT 138665 ||||| | |||| | || ||||||||| | ||||| || || | ||| | ||| Sbjct 56234587 TCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATG 56234528 Query 138666 AGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAA 138725 ||| | ||| || | ||||| ||| | |||||| | || |||| ||| | || ||| Sbjct 56234527 AGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAA 56234468 Query 138726 GAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTG 138785 |||||| ||||||| |||||||| || || || || ||||| || || || |||||| | Sbjct 56234467 GAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATTCTTTTA 56234409 Query 138786 AATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGAT---CAACCTCACGAAAACTTTGTT 138842 || |||||| | || | |||||||| || |||| || ||||| |||||| || | Sbjct 56234408 AACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATA 56234349 Query 138843 TTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || |||| || || || ||| | || | | |||| Sbjct 56234348 TTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 56234314 Score = 111 bits (122), Expect = 2e-19 Identities = 214/302 (71%), Gaps = 13/302 (4%) Strand=Plus/Plus Query 135479 TTCATCGCTGCA-CCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTG-CTGGTTCTC 135536 ||||| ||||| |||| || |||||||| | || | ||||||||| ||||| ||| Sbjct 10190728 TTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTTTTCTGGT-CTC 10190785 Query 135537 TAATGTACGG--AAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGC--AACGCCATC 135592 | | || || ||| || || | || ||||| |||| || || | | || || Sbjct 10190786 TTCTTTAAGGTGAAACAATATTAGTTCCGGTGCA-TTATTTCTACTGTCTCAGGGCTATG 10190844 Query 135593 GGCCTT-CACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAG-TGGCTATATAATG 135650 | || || || || |||||||| ||||||| || ||||||| |||||||| || Sbjct 10190845 TGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTATACAAAC 10190903 Query 135651 GTGGTC-CTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGT 135709 ||||| ||||| ||||| | || | ||||| | | ||||| | ||| |||||| Sbjct 10190904 GTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGT 10190963 Query 135710 CGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCA 135769 || ||||||||||| || ||| ||||||||||| ||||||||| ||| || || ||| Sbjct 10190964 CGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 10191023 Query 135770 GC 135771 || Sbjct 10191024 GC 10191025 >seq14 Length=28343526 Score = 197 bits (218), Expect = 2e-45 Identities = 219/292 (75%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759 ||| |||| | | ||||||||||| || | | |||||||| || ||||||||| ||| Sbjct 20844998 TTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGT 20845057 Query 135760 CGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACA 135819 || || |||| |||||||| |||||| || ||||||| || ||| ||| ||| || Sbjct 20845058 TGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCA 20845117 Query 135820 AGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGT 135879 ||| ||| |||| ||||||| || || || ||||| ||||| |||| ||| |||| Sbjct 20845118 AGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 20845177 Query 135880 TTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGT 135939 ||||| | || ||||||||||| ||||| || || |||||||| || || ||||| || Sbjct 20845178 ATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 20845237 Query 135940 CTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGT 135991 ||||| || ||||| || |||||||||| | || || || | |||||| Sbjct 20845238 ATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTCTAGT 20845289 >seq8 Length=29345952 Score = 104 bits (114), Expect = 3e-17 Identities = 118/155 (76%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 135837 GTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACA 135896 ||||||| || | || ||||| ||||| |||| ||| |||| |||||||| || |||| Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 135897 ACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGT 135956 ||||||| ||||| | |||| ||||| || || ||||| || ||||| || || || | Sbjct 6844732 ACATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 135957 TCTCTGCTATGCATGGATCTCTTGTCACCTCTAGT 135991 | |||||||||| | ||| ||| || |||||| Sbjct 6844790 TTAGTGCTATGCATAGTTCT-TTGGAACTTCTAGT 6844823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627891497798400