Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq14 172 2e-38 seq8 114 4e-21 seq12 95.1 3e-15 >seq14 Length=28343526 Score = 172 bits (190), Expect = 2e-38 Identities = 194/257 (75%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689 |||||||||| || | | | || || | || ||||| || |||||| ||| | Sbjct 20845012 AGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAGATC 20845071 Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGT 19748 | | || | ||| ||| ||| ||||| | | | |||| ||| ||||| |||||| | Sbjct 20845072 CTGTTGCAACTGCTATTGGTGT-TTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTTCT 20845130 Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808 ||| |||||||||| || |||||||||||||| ||||||||| | ||||||||| | || Sbjct 20845131 GATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTGAG 20845190 Query 19809 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCT 19868 ||||| || |||||||| || || |||||| | ||||| ||||| |||||||| || ||| Sbjct 20845191 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCT 20845250 Query 19869 CTTTTCTCTGCTATGCA 19885 ||||| ||||||||| Sbjct 20845251 CTTTTTAGTGCTATGCA 20845267 >seq8 Length=29345952 Score = 114 bits (126), Expect = 4e-21 Identities = 141/185 (76%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 19753 GTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACA 19812 |||||||||| | |||||||||||||| ||||||||| | |||||||| || || |||| Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 19813 ATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTT 19872 | || |||||||| || || || ||| | ||||| ||||| |||||||| || || || | Sbjct 6844732 ACATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 19873 TCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGAT-CATCAAGGAAACAACTGAGGAT 19931 | ||||||||| | ||||| |||| || | | |||| |||||| || | ||| Sbjct 6844790 TTAGTGCTATGCATAGTTCTTTGG-AACTT-CTAGTTGAATCAGGGAAACCACAAAAGAT 6844847 Query 19932 GTATC 19936 | ||| Sbjct 6844848 GAATC 6844852 >seq12 Length=60369500 Score = 95.1 bits (104), Expect = 3e-15 Identities = 80/96 (83%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 19696 CAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGT 19754 |||| ||| |||||| ||||| | | |||||| |||| ||| | |||||| ||||||| Sbjct 27415792 CAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAAGAAGTTTTTCTGATGGT 27415734 Query 19755 ATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 19790 |||||||| || |||||||||||||| ||||||||| Sbjct 27415733 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 27415698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144424883231976