Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq14 150 3e-31 seq3071 104 4e-17 seq8 104 4e-17 >seq14 Length=28343526 Score = 150 bits (166), Expect = 3e-31 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | | || | ||||| ||||||||||| |||||| ||||||| | Sbjct 20845012 AGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAGATC 20845071 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| || | ||| | | ||| ||| | | | |||| | | ||| || || || | Sbjct 20845072 CTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTTCTG 20845131 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | |||||||| |||| || || || || |||||||| ||| | ||||||||| | || | Sbjct 20845132 ATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTGAGC 20845191 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 | ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 20845192 ACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTC 20845251 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGT 212177 | || ||||||||| |||| || || Sbjct 20845252 TTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq3071 Length=6037 Score = 104 bits (114), Expect = 4e-17 Identities = 90/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG-GTTGTTCC 212465 ||||||||||| ||||| |||||||||||||| |||||| ||| | | | ||| || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG-TCAAGGACGTGTTTTTAA 1683 Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATG 212514 |||||||| |||| || ||||| | || ||||||||||||||||||||| Sbjct 1682 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 1634 >seq8 Length=29345952 Score = 104 bits (114), Expect = 4e-17 Identities = 90/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG-GTTGTTCC 212465 ||||||||||| ||||| |||||||||||||| |||||| ||| | | | ||| || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG-TCAAGGACGTGTTTTTAA 10479871 Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATG 212514 |||||||| |||| || ||||| | || ||||||||||||||||||||| Sbjct 10479870 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 10479822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807456819587760