Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq9 152 6e-32 seq18 84.2 2e-11 >seq9 Length=62778564 Score = 152 bits (168), Expect = 6e-32 Identities = 405/617 (66%), Gaps = 24/617 (4%) Strand=Plus/Minus Query 172219 TCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCG 172278 |||||||||| |||||| ||||||| | ||||||||| | ||| |||||||| | Sbjct 56234905 TCTTTCTAATTTATCCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAG 56234846 Query 172279 CAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCAT 172338 | || || ||||| | || | || | || || || || ||| | || ||| ||| Sbjct 56234845 CGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCAT 56234786 Query 172339 TTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTG 172398 ||||| ||||||| | || ||| ||||||| | || | |||| || || |||||| Sbjct 56234785 TTCATTTGATGGGAATTGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTG 56234726 Query 172399 CAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAAT 172458 | || ||| ||| | ||| | | ||| || | ||| ||| | | ||| Sbjct 56234725 CTACTGTA--GAA-ATATTTTTT--------ATCTGAAAATGGTGATGGTGCAAATAAAT 56234677 Query 172459 CTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTG 172518 | | || || | || | || | |||||||||||| ||| | || | Sbjct 56234676 ---------TATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAATGGTCACCG 56234626 Query 172519 CTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACT 172578 ||||| | || ||||||| || ||||| || ||||| || ||| | ||||| | Sbjct 56234625 CTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTGGTTACAAT 56234566 Query 172579 TCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTC 172638 || ||||||| || ||||| || | ||| | ||| || | | || ||||||| Sbjct 56234565 TCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAATAGTAGGTC 56234506 Query 172639 TTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACC 172698 | || | ||||| | || || | ||| | || ||||| || | ||||| ||||| | Sbjct 56234505 TAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGCGGAAGATC 56234446 Query 172699 CAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGA 172758 | || ||||||| ||||| ||||| || |||||| | || |||||||| | | |||| Sbjct 56234445 CGGA-CTTGAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCACTTGGA 56234387 Query 172759 TGTCATCTGTCGAT---CAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCAC 172815 || | || ||| || || ||||| ||| || | ||| | || || || || |||| Sbjct 56234386 TGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGTTTTACCAC 56234327 Query 172816 GAGGCAACGCACTATAA 172832 | || | | | || ||| Sbjct 56234326 GTGGAAGCACTCTTTAA 56234310 >seq18 Length=77673080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || || ||||| || | || ||||||||| Sbjct 3654925 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 3654984 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||| || | | | || ||||||||| ||| || || || Sbjct 3654985 CTATTGCTCTTTCCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTT 3655044 Query 171915 GTGACCTCATGGTACACACATGGTATTG 171942 || || |||| ||| || ||||| |||| Sbjct 3655045 GTAACTTCATCGTATACTCATGG-ATTG 3655071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570199327003440