Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq133 113 1e-19 seq8 104 6e-17 seq1 100 7e-16 seq18 98.7 3e-15 seq3 98.7 3e-15 seq6 89.7 1e-12 >seq133 Length=227095 Score = 113 bits (124), Expect = 1e-19 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| |||||||| || | | || |||||| Sbjct 171800 ATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTACGTTGCCAATGGAGAGCTTTC 171858 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct 171859 ATGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 171918 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| | || ||||| || | |||||||| Sbjct 171919 ATACTCCCTTCTTACATGTATCCTCGCTCAT 171949 >seq8 Length=29345952 Score = 104 bits (114), Expect = 6e-17 Identities = 161/224 (72%), Gaps = 11/224 (5%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||||||| ||| ||||| || | ||| ||| | ||| | ||||| |||| Sbjct 19411124 ATGAAGGACGATAGCATTGAGGGAATTTATGATACATTGAAGGAGTGTGCAGTTAT---- 19411069 Query 363682 AAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736 ||| ||| || || || |||||||| || | ||||| | ||||| |||| | |||| Sbjct 19411068 AAGTAAATCAGCTGGGGGTATTGGTGTTTCAGTTCACAACATCCGTGCGACAGGA-AGTT 19411010 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| ||||| ||| || ||||| | |||| ||||| ||||| || | Sbjct 19411009 ACATTCGTGGCACGAATGGAACATCTAATGGTATTCTTCCAATGCTGCGTGTTTTCAATG 19410950 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||||||| | ||||| ||||| || ||||| ||| | |||||| Sbjct 19410949 ATACTGCTCGCTACGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 19410907 Score = 86.0 bits (94), Expect = 2e-11 Identities = 157/224 (70%), Gaps = 11/224 (5%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||| ||||| || | ||| ||| | || | || || |||| Sbjct 15956578 ATGAAGGATGATAGCATTGAGGGAATATATGATACATTGAAAGAGTGCGCAGTTAT---- 15956633 Query 363682 AAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736 ||| ||| || || ||||| ||||| || | ||||| | ||||| |||| | |||| Sbjct 15956634 AAGTAAATCAGCTGGGGGAATAGGTGTTTCAGTTCACAACATCCGTGCGACAGGA-AGTT 15956692 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| |||||| ||| || || || | ||||| ||||| || || || | Sbjct 15956693 ACATTCGTGGCACAAATGGAACATCTAACGGTATTGTTCCAATGCTGCGGGTATTCAATG 15956752 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 | ||||| | ||||| ||||| || ||||| ||| | |||||| Sbjct 15956753 ACACTGCTCGCTACGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 15956795 >seq1 Length=45320942 Score = 100 bits (110), Expect = 7e-16 Identities = 116/151 (77%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGAT-GCTTT 111729 ||||||||||| ||||| || | | | ||| |||||||| || ||| ||| ||||| Sbjct 9628029 ATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTACGTTG-CGAATGGAGAGCTTT 9628086 Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 | || |||||||||||||| || |||||||| ||||||||||| || ||||| ||||| Sbjct 9628087 CGTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCCT 9628146 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | | ||||| Sbjct 9628147 CATACTCCCTTCTTACATGCATTCTAGCTCA 9628177 Score = 96.9 bits (106), Expect = 9e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| || || || || || | | | ||| ||||| ||||| || ||| ||| || Sbjct 31775555 ATGGCGCTGCCTCCGTGCCA-CATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTC 31775497 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 |||||| ||||||||||| || || ||||| | |||||||| |||||||| ||||| Sbjct 31775496 ATGCCAGATGTATCAGCGTTCAGCGGATATGAGCCTTGGTGTGCCGTTTAACATTGCTTC 31775437 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| | | |||||| | |||| || ||||| || | Sbjct 31775436 CTACTCTCTTCTTACTTGCATGCTAGCTCATGTGTGTGATCTTGTCCCTGGTGATTTTGT 31775377 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| ||||| || Sbjct 31775376 CCATGTCATTGGGGATGCTCATGTGTA 31775350 >seq18 Length=77673080 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| ||||||||||| | || |||||| Sbjct 76170289 ATGGCACTTCCTCCTTGCCA-CATGTTTGCACAGTTTTATGTTGCAAATGGAGAGCTTTC 76170231 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || || || ||||||||||| |||||||| ||||| Sbjct 76170230 GTGTCAAATGTATCAGCGGTCAGCAGACATGGGTCTTGGTGTACCGTTTAACATTGCCTC 76170171 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||| ||||| ||| | |||||||| Sbjct 76170170 ATATTCACTTCTTACATGCATCCTCGCTCAT 76170140 Score = 96.9 bits (106), Expect = 9e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| ||||| || | | | || ||||| || || |||||| ||| || Sbjct 7477348 ATGGCGCTTCCTCCATGCCA-CATGTTCGCACAGTTCTACGTGGTGGACGGGGAGCTCTC 7477290 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || ||||| || || ||||| |||||||| ||||| Sbjct 7477289 GTGTCAAATGTATCAGCGTTCAGCGGATATGGGCCTCGGTGTGCCGTTTAACATTGCTTC 7477230 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| | | |||||| | |||| || ||||| || || Sbjct 7477229 CTACTCTCTTCTTACTTGCATGCTAGCTCATGTGTGCGATCTTGTTCCTGGTGATTTTAT 7477170 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| || || || Sbjct 7477169 CCATGTCATTGGGGATGCTCACGTGTA 7477143 >seq3 Length=43957692 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| |||||||| || |||| ||| || Sbjct 40985510 ATGGCACTTCCTCCTTGCCA-CATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTC 40985452 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 40985451 GTGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 40985392 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||||| ||| | | |||||| Sbjct 40985391 ATACTCACTTCTTACATGCATCCTAGCTCAT 40985361 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| |||||||| || |||| ||| || Sbjct 41004488 ATGGCACTTCCTCCTTGCCA-CATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTC 41004430 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 41004429 GTGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 41004370 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||||| ||| | | |||||| Sbjct 41004369 ATACTCACTTCTTACATGCATCCTAGCTCAT 41004339 Score = 96.9 bits (106), Expect = 9e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| || || || || || | | | ||| ||||| ||||| || ||| ||| || Sbjct 31765679 ATGGCGCTGCCTCCGTGCCA-CATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTC 31765737 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 |||||| ||||||||||| || || ||||| | |||||||| |||||||| ||||| Sbjct 31765738 ATGCCAGATGTATCAGCGTTCAGCGGATATGAGCCTTGGTGTGCCGTTTAACATTGCTTC 31765797 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| | | |||||| | |||| || ||||| || | Sbjct 31765798 CTACTCTCTTCTTACTTGCATGCTAGCTCATGTGTGTGATCTTGTCCCTGGTGATTTTGT 31765857 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| ||||| || Sbjct 31765858 CCATGTCATTGGGGATGCTCATGTGTA 31765884 Score = 96.9 bits (106), Expect = 9e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| || || || || || | | | ||| ||||| ||||| || ||| ||| || Sbjct 31810062 ATGGCGCTGCCTCCGTGCCA-CATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTC 31810004 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 |||||| ||||||||||| || || ||||| | |||||||| |||||||| ||||| Sbjct 31810003 ATGCCAGATGTATCAGCGTTCAGCGGATATGAGCCTTGGTGTGCCGTTTAACATTGCTTC 31809944 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| | | |||||| | |||| || ||||| || | Sbjct 31809943 CTACTCTCTTCTTACTTGCATGCTAGCTCATGTGTGTGATCTTGTCCCTGGTGATTTTGT 31809884 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| ||||| || Sbjct 31809883 CCATGTCATTGGGGATGCTCATGTGTA 31809857 >seq6 Length=38054609 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/224 (71%), Gaps = 11/224 (5%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||| ||||| || | ||| ||| | || | ||||| |||| Sbjct 36615925 ATGAAGGATGATAGCATTGAGGGGATTTATGATACATTGAAAGAGTGTGCGGTTAT---- 36615870 Query 363682 AAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736 ||| ||| || || || |||||||| || | ||||| | ||||| || | | |||| Sbjct 36615869 AAGTAAATCAGCTGGGGGTATTGGTGTTTCTGTTCACAACATCCGTGCTACTGGA-AGTT 36615811 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| ||||| ||| | || ||||| | ||||| ||||| || ||||| | Sbjct 36615810 ACATTCGTGGCACTAATGGAGAATCTAATGGTATTGTTCCAATGCTGCGGGTGTTCAATG 36615751 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||||||| | || || ||||| || || || ||| | |||||| Sbjct 36615750 ATACTGCTCGTTATGTTGACCAAGGAGGTGGCAAGAG-AAAGGG 36615708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303190849421372