Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq9 279 6e-70 seq14 149 7e-31 seq60 87.8 2e-12 seq8 82.4 9e-11 >seq9 Length=62778564 Score = 279 bits (308), Expect = 6e-70 Identities = 447/638 (70%), Gaps = 7/638 (1%) Strand=Plus/Minus Query 167680 CAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCC 167739 |||| | || | || |||||||| |||||||| ||||| || || ||||| || ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 167740 TCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATT 167799 || || || || ||||||||||| || |||||||| || || |||||| |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 167800 CCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGT 167859 | | || || | || || || ||||| ||| | || || | || ||| |||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 167860 TGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATAC 167919 ||| ||| | || |||| || || | | || || |||||| ||| ||||| |||| Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 167920 TCTGTA--TGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAA 167977 | | || |||| ||||||| ||||| | || || ||| | | | ||| | Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| |||||||| |||||||| || ||||| | ||| ||||| |||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGG 168097 || |||||| | |||||| || ||||||||| | || || || || | || | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 168098 ACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCT 168157 | ||| || ||| || | ||||| || | || || |||| |||| ||| | || Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 168158 CAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTC 168217 || ||| || | ||||| || ||||| || |||||||||||||||| ||||| || || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 168218 CTCAATGAAGGACTCCGTGCCTGGAT---GGCTCCAGTAGACCAACCACATGAAAACTTT 168274 | || ||||| | || | ||||| ||||| | | || || ||||||||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 168275 GTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||||| | || || || || ||| | || | | |||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 56234314 >seq14 Length=28343526 Score = 149 bits (164), Expect = 7e-31 Identities = 187/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 166381 TACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTA 166440 || |||| | |||| |||||| | || | | || ||||| |||||||||||| || Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500 ||||| || | ||||||||| | || | || ||| || ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 166501 GGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 166560 || ||| ||||| ||||| || || ||| ||| || ||||||| ||| |||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 |||||| | ||||||||||| || |||||||| || || ||| | |||||||| |||||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 166621 TTCGGTGGGTCACTTTT 166637 ||||| || || ||||| Sbjct 20845239 TTCGGCGGCTCTCTTTT 20845255 >seq60 Length=523306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 167492 TCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 167551 || ||||||||| | | | | |||||| | | ||| |||| |||||| | || Sbjct 21486 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 21545 Query 167552 GGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 167611 || ||||| | | ||||| || || || || | ||||||||||| || |||||| | Sbjct 21546 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 21605 Query 167612 GCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATC 167671 || || | | ||||| |||||| | | ||||||| | | || || | Sbjct 21606 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCAATTG 21665 Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731 || ||||| ||||| |||| || | ||||| |||| ||| ||||| || || ||||| Sbjct 21666 CGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCTA 21725 Query 167732 ATCTATCCTCT 167742 || |||||||| Sbjct 21726 ATTTATCCTCT 21736 >seq8 Length=29345952 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 166536 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595 ||| || ||||||| ||| |||| ||||| || ||||||||||| || ||||||| || Sbjct 6844691 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCATTT 6844750 Query 166596 CCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTT 166637 | ||| | |||||||| ||||||||||| || || || || Sbjct 6844751 C--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567162896961600