Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq13 107 1e-18 seq10 107 1e-18 seq18 96.9 2e-15 seq1 87.8 1e-12 seq148 84.2 2e-11 >seq13 Length=83567108 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || ||||||||||| |||| ||| || Sbjct 62923887 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 62923946 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || ||| ||||| |||||| | ||| |||| Sbjct 62923947 GATACCATCGACAATGTTAAAGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 62924006 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||||| |||||| ||| | || || ||||| Sbjct 62924007 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGTACTCTTGCTGACTACAAC 62924066 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||||||||| ||||| |||| |||||| |||| || || Sbjct 62924067 ATTCAAAAGGAATCTACACTTCACTTGGTCTTACGTCTACGTGGGGG 62924113 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || ||||| || || ||||| |||| ||| | | Sbjct 62907154 ATGCAGATCTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 62907213 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| || || ||||||||| | ||| |||| Sbjct 62907214 GACACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAG 62907273 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| ||||| || || || ||| || |||| | || || ||||| Sbjct 62907274 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGAACTCTTGCTGACTACAAC 62907333 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| |||||||| || |||| || ||| |||| ||||| Sbjct 62907334 ATTCAGAAGGAGTCTACTCTCCACTTGGTCTTGCGTCTACGTGGAGG 62907380 >seq10 Length=22354415 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || || || || ||||| || |||||| ||||| ||| | | Sbjct 21870338 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTC 21870397 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| || ||| || || || || | ||| |||| Sbjct 21870398 AGACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 21870457 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| ||||| ||||| ||||| || || ||| || | || |||||||| Sbjct 21870458 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACAA 21870517 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || ||||| ||| |||| | ||| | || || ||| Sbjct 21870518 CATTCAGAAGGAGTCGACTCTGCATTTGGTTCTGCGTCTTCGTGGTGGA 21870566 >seq18 Length=77673080 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || ||||| || || ||| ||||| || | || Sbjct 62463572 ATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTCA 62463631 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || || | ||| ||||| Sbjct 62463632 GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 62463691 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| ||||| || || ||| | ||| |||| |||||||| Sbjct 62463692 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAAC 62463751 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || |||||||| Sbjct 62463752 ATCCAGAAGGAGTCGACTCTTCA 62463774 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || ||||||||||| || | || ||| | || Sbjct 62463344 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTGGAGAGCTCA 62463403 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | | ||| ||| ||| || || || || | || | |||| Sbjct 62463404 GACACGATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 62463463 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| ||||| || || ||| || | || ||||||||| Sbjct 62463464 CAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCGGATTACAAT 62463523 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||| ||||| | || || ||| | || || || Sbjct 62463524 ATTCAGAAGGAATCTACCCTTCACCTTGTGTTGCGTCTTCGTGGTGG 62463570 >seq1 Length=45320942 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| |||| ||||| |||||||| ||||| || ||| | ||| Sbjct 18861468 GACAAGGAGGGTATTCCTCCCGACCAGCAGAGGCTTATCTTCGCTGGAAAGCAATTGGAA 18861409 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| | || ||||||||||||| ||||||||||| ||||| ||||| |||| Sbjct 18861408 GATGGCAGGACCTTGGCCGATTACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 18861353 >seq148 Length=210760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | | |||||||| || ||||||||||| ||||||||||| Sbjct 36982 GACAAAGAGGGGATACCACCAGATCAACAGAGGCTCATCTTTGCTGGGAAACAACTAGAG 36923 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||| |||| || ||||| || ||||| || || |||||||| |||| || Sbjct 36922 GATGGCCGAACGCTGGCTGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCTT 36864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358082262160084