Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18 304 2e-77 seq16 257 3e-63 seq2 253 4e-62 seq6 221 2e-52 >seq18 Length=77673080 Score = 304 bits (336), Expect = 2e-77 Identities = 589/861 (68%), Gaps = 20/861 (2%) Strand=Plus/Minus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 ||| | | |||||| |||||||||||||| || |||| ||||||||||||||| Sbjct 68188841 ACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAAG 68188782 Query 42352 TTGACCTGGCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACGAAAAGTTT 42407 | ||||| || ||||||| || ||||||| ||| | | |||| || | Sbjct 68188781 TCGACCTCTCCCAGGACACACGCGACTGGGAGAATCTCAACGACGGAGAGCGCCAC---- 68188726 Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | || ||||||||||||||||| ||||| || ||| |||||||| Sbjct 68188725 TTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAACCTC 68188666 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 ||| | |||||||| || || ||| || ||||||||| ||||||||| |||||| Sbjct 68188665 GCCTCACGGTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCCAG 68188606 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTG 42587 || || || |||||| | ||||| ||| ||||| | ||| | ||||||||||| | Sbjct 68188605 ATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTGTTAGACACGTACATCAAG 68188546 Query 42588 GATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 || | ||| | || || ||| || || ||||| || |||||| || |||| Sbjct 68188545 GACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACCATCCCCTGCGTCGCGAAG 68188486 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 ||||| | ||||| | | |||||||| | ||||| || |||| ||||||| | Sbjct 68188485 AAGGCCCAATGGGCCATGACGTGGATCGATGGGTCCC----AGACTTTCGCCGAGAGGAT 68188430 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 || ||||| | ||| || || ||||||||||| || |||| ||| |||||||| Sbjct 68188429 CGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTG 68188370 Query 42767 GCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 ||||||| || ||| || |||||||| | |||||||| ||||| || ||| || | Sbjct 68188369 GCTCAAGAAGCGAGGGCTC-ATGCCCGGGTTGACCTTCTCCAACGAGCTGATCTCGAGAG 68188311 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 |||| || || || | || || || || |||| ||| | | ||| ||| |||| Sbjct 68188310 ACGAAGGCCTTCACTGCGATTTCGCGTG---CCTGATCTACACGCTCCTGAGGACGAAGC 68188254 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 | || ||||||| || | | ||| | || |||||||||||||||| |||||| Sbjct 68188253 TCACGGAGGAGCGCGTGAAGTCGATCGTGTGCGACGCCGTGGAGATCGAGAGGGAGTTTG 68188194 Query 42946 TCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTAC 43004 | | |||| ||||| | |||| || ||||||| ||||| ||| | ||||| Sbjct 68188193 TGTGCGACGCGCT-TCCGTGCGCGTTGGTGGGGATGAACCGTGACCTGATGAGTCAGTAC 68188135 Query 43005 ATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACG 43064 ||| ||| || || || || ||| | | | || | | | ||| || Sbjct 68188134 ATCGAGTTTGTGGCGGATAGGCTTCTGGGGGCGCTTGGGTACGGGAAGGTGTACGGTGCG 68188075 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 || || || || | |||||| |||||| | |||| || |||||||| |||||| Sbjct 68188074 GCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTCAGGGGAAAACCAACTTCTTCGAG 68188015 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 ||| | || | || |||||| Sbjct 68188014 AAGAGAGTTGGTGATTACCAG 68187994 >seq16 Length=18736220 Score = 257 bits (284), Expect = 3e-63 Identities = 448/651 (69%), Gaps = 17/651 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | |||| ||||||||||||||| | ||||| Sbjct 836401 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 836460 Query 42360 GCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 || | ||| | || ||||||| ||| | | |||| || | ||| | Sbjct 836461 TCCCAAGACCCCCGCGACTGGGAGGAAAATCTCAACGACGGAGAGCGCCAC----TTCGT 836516 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 |||| || | || |||||||||||||| || ||||| || ||| |||||||| ||| | Sbjct 836517 CAAACACGTCCTCGCCTTCTTCGCCGCATCCGACGGGATCGTCCTCGAGAACCTCGCCTC 836576 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | |||||| || || ||| || ||||| ||| ||||||||| |||||||| || Sbjct 836577 TCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGC 836636 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| ||| ||||| ||| | | || |||||| |||| Sbjct 836637 GATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGTTAGATACTTACATCAAGGATAA 836696 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 ||| | || || ||| || || |||||||| |||||| || ||||||||| Sbjct 836697 TAGAGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATCCCCTGCGTCGCGAAGAAGGC 836756 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 | ||||| | | |||||||| | | | | | || | ||||||| | || || Sbjct 836757 CCAATGGGCCATGACGTGGATCGACGGATCACAGG---CCTTTGCCGAGAGGATCGTGGC 836813 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | ||| || || |||||||||||||| |||| ||| |||||||||||||| Sbjct 836814 GTTTGCTTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCTCGATCTTCTGGCTCAA 836873 Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 | || | | ||||| || ||||||||||| ||||| || ||| || ||||| || Sbjct 836874 GAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAAGG 836933 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA 42892 ||||| | ||||| || ||||| | | ||| || ||| ||| |||| |||| | Sbjct 836934 CCTGCACTGCGACTTCGCGTGCCTGATCTACTC---CCTCCTGAGGACGAAGCTCTCGGA 836990 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 |||||| || || | ||| | || || ||||||||||||| |||||| Sbjct 836991 GGAGCGCGTGAGGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTT 837041 >seq2 Length=25468329 Score = 253 bits (280), Expect = 4e-62 Identities = 452/654 (69%), Gaps = 23/654 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | |||| ||||||||||||||| | ||||| Sbjct 22244272 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 22244213 Query 42360 GCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 || | ||||| || ||||||| ||| | | | || || | ||| | Sbjct 22244212 TCCCAAGACACCCGCGACTGGGAGACCAACCTCAACGACGGCGAGCGCCAC----TTCAT 22244157 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 |||| || | || ||||||||||||||||| ||||| || ||| ||||| || ||| | Sbjct 22244156 CAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTC 22244097 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | |||||||| || |||||| || |||||||| ||||||||| |||||||| || Sbjct 22244096 CCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAGATCGC 22244037 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || ||||| | ||||| ||| ||||| | |||| | ||||||||| ||| Sbjct 22244036 GATTGAGAATATCCACTCGGAGATGTACAGCCTCTTGCTAGATACGTACATCAAGGACAA 22243977 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | ||| | || || ||| || || ||||| || || ||| || ||||||||| Sbjct 22243976 CAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGGC 22243917 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGTA 42710 | ||||| | || |||||||| | || | || || |||| ||||||| | || Sbjct 22243916 CCAATGGGCCTTGAAGTGGATCGA-----CGGATCTCAGACTTTCGCCGAGAGGATCGTG 22243862 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 ||||| | ||| || || ||||||||||| || |||| |||||||||||||||| Sbjct 22243861 GCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTC 22243802 Query 42771 AAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| || ||| || ||||| || ||||||||||| ||||| || ||| ||||||| Sbjct 22243801 AAGAAGCGAGGGCTC-ATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACGA 22243743 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC 42889 || || || | ||||| || || |||| ||| | | | ||| |||| || Sbjct 22243742 AGGCCTTCACTGCGACTTCGCGTG---CCTGATCTATACCTTGTTGAGGACGAAGCTATC 22243686 Query 42890 GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 | ||||||| || | | ||| | || || ||||||||||||| |||||| Sbjct 22243685 GGAGGAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTT 22243632 >seq6 Length=38054609 Score = 221 bits (244), Expect = 2e-52 Identities = 453/667 (68%), Gaps = 20/667 (3%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| | | |||||| |||||||||||||| || ||| ||||||||| Sbjct 29819591 GATCCACTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGC 29819650 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACG 42399 ||| || | || || || | ||||| || ||||||| ||| | | |||| || Sbjct 29819651 CGAAGAAGTCGATCTCTCCCAAGACACTCGCGACTGGGAGAATCTCAACGACGGAGAGCG 29819710 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | ||| ||||| || | || |||||||||||||| || ||||| || || | Sbjct 29819711 CCAC----TTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCCGACGGAATCGTTTTAG 29819766 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 |||| || ||| || |||||||| || ||||| || |||||||| |||||||| Sbjct 29819767 AGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTTCTACG 29819826 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 | |||||||| || || ||||| | ||||| ||| ||||| | |||||| |||||| Sbjct 29819827 GGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGT 29819886 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 ||||| |||| ||| | || || ||| || || || || || || ||| Sbjct 29819887 ACATCAAGGATAATAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATACCTTGCG 29819946 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGG 42697 || ||||||||| | ||||| | | |||||||| | || | || || |||| Sbjct 29819947 TCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGA-----CGGATCTCAGACTTTCGC 29820001 Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 ||||||| | || || ||| | ||| || || ||||||||||| || |||| ||| Sbjct 29820002 CGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTC 29820061 Query 42758 CATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCA 42816 ||||||||||| ||| || ||| || ||||| || | |||||||| ||||| | | Sbjct 29820062 GATCTTCTGGCTGAAGAAGCGAGGGCTC-ATGCCTGGGTTAACCTTCTCCAACGAGTTGA 29820120 Query 42817 TCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 || | ||||| || || || | ||||| || || |||| ||| | | | | Sbjct 29820121 TCTCTCGAGACGAAGGCCTTCACTGCGACTTCGCGTG---CCTGATCTATACTCTATTGA 29820177 Query 42877 GGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGA 42936 || |||| | || ||||||| || | | || | || || ||||||||||||| Sbjct 29820178 GGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATTGTTTGCGACGCGGTGGAGATCGAGA 29820237 Query 42937 AGGAGTT 42943 |||||| Sbjct 29820238 GGGAGTT 29820244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944224155876960