Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq133 114 1e-20 seq1 111 1e-19 seq18 107 2e-18 seq3 98.7 9e-16 >seq133 Length=227095 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || ||| | || | ||||| || |||||||||||| || || || | | Sbjct 171951 ACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAGA 171892 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| |||||||| || | || || ||||| Sbjct 171891 CCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAAC 171832 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 ||| |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 171831 TGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 171772 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 |||| || || | || ||||| ||||| || || || Sbjct 171771 GACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 171734 >seq1 Length=45320942 Score = 111 bits (122), Expect = 1e-19 Identities = 187/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || ||||||||||||||| || || | | Sbjct 9628180 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAAAGGTACACCAAGA 9628121 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| |||||||| || | || || ||||| Sbjct 9628120 CCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCAACGTAAAAC 9628061 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 ||| |||| ||| || || ||||| ||||||| | | ||| | || ||||| ||| Sbjct 9628060 TGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCA 9628001 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 |||| || || | | ||||| ||||| || || || | | | || | | Sbjct 9628000 GACATTATAATCCGCCGATCGTCAGGATTGTTCTTGATCTTGTTAATTACGTCTAAGAGC 9627941 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || ||||| || || ||||||| Sbjct 9627940 TGATCAAATCCTTGGCCAGTGTAATCAGCAT 9627910 Score = 93.3 bits (102), Expect = 4e-14 Identities = 183/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| ||||| |||| | || || ||| ||||||||||| || || || | Sbjct 31775404 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 31775463 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 | ||| || | || | |||||||| ||| || || ||||| || || || ||||| || Sbjct 31775464 CTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAAC 31775523 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || || |||||||||| | | ||| | |||||||| ||| Sbjct 31775524 TGCGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCA 31775583 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 | | |||| | | ||| | ||||| || || || || | | || | | Sbjct 31775584 GATAATCTGATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGTCTGCGAGC 31775643 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || |||| || || ||||||| Sbjct 31775644 TGATCAAAGCCTTGGCTAGTGTAATCAGCAT 31775674 >seq18 Length=77673080 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | || ||||| |||||||||||| || || || | | Sbjct 76170138 ACATGAGCGAGGATGCATGTAAGAAGTGAATATGAGGCAATGTTAAACGGTACACCAAGA 76170197 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||||||| | |||| |||||||| ||||| |||||||| || | || |||||||| Sbjct 76170198 CCCATGTCTGCTGACCGCTGATACATTTGACACGAAAGCTCTCCATTTGCAACATAAAAC 76170257 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || |||| ||| || || ||||| ||||||| Sbjct 76170258 TGTGCAAACATGTGGCAAGGAGGAAGTGCCATCA 76170291 Score = 98.7 bits (108), Expect = 9e-16 Identities = 216/321 (67%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 20197 GTGGGCATCTCCCAACGTG-TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAA 20255 ||| ||||| ||||| | || ||||| || || || |||| | |||||||| | Sbjct 7477148 GTGAGCATC-CCCAATGACATGGATAAAATCACCAGGAACAAGATCGCACACATGAGCTA 7477206 Query 20256 GCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTC 20315 |||| |||| | || || ||| ||||||||||| || || || | ||||| || Sbjct 7477207 GCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCGAGGCCCATATCCG 7477266 Query 20316 CCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACA 20375 | || | |||||||| ||||| || ||||| ||||| | || || || || |||| Sbjct 7477267 CTGAACGCTGATACATTTGACACGAGAGCTCCCCGTCCACCACGTAGAACTGTGCGAACA 7477326 Query 20376 AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGA 20435 ||| || || ||||||||||||||| | || | || ||||| || | | |||| Sbjct 7477327 TGTGGCATGGAGGAAGCGCCATCAACTTGAGATCAGAAGGATTCCAAGCCGATAATATGA 7477386 Query 20436 TTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACC 20495 | | | ||| | ||||| || || || || | | || | || ||||| | Sbjct 7477387 TACGACGATCATCAGGATTGTTCTTGATCTTGTCGATTACGTCTAGGAGCTGATCAAATC 7477446 Query 20496 CCTGGCCTGTATAGTCAGCAT 20516 | ||||| ||||| ||||||| Sbjct 7477447 CTTGGCCGGTATAATCAGCAT 7477467 >seq3 Length=43957692 Score = 98.7 bits (108), Expect = 9e-16 Identities = 189/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | || || || |||||||||||| || || || | | Sbjct 40985359 ACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAGA 40985418 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| ||| | || | |||||||| ||||| || ||||| |||| || || ||||| Sbjct 40985419 CCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAAC 40985478 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 40985479 TGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 40985538 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | | ||| | ||||| || || || | || | || || || | Sbjct 40985539 GACATTATTATCCGGCGATCATCAGGATTGTTCTTGATCTTGTTAA-CTAC-ATCTA--A 40985594 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| || || ||||||| Sbjct 40985595 GAGCTGATCAAATCCTTGGCCAGTGTAATCAGCAT 40985629 Score = 98.7 bits (108), Expect = 9e-16 Identities = 189/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | || || || |||||||||||| || || || | | Sbjct 41004337 ACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAGA 41004396 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| ||| | || | |||||||| ||||| || ||||| |||| || || ||||| Sbjct 41004397 CCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAAC 41004456 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 41004457 TGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 41004516 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | | ||| | ||||| || || || | || | || || || | Sbjct 41004517 GACATTATTATCCGGCGATCATCAGGATTGTTCTTGATCTTGTTAA-CTAC-ATCTA--A 41004572 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| || || ||||||| Sbjct 41004573 GAGCTGATCAAATCCTTGGCCAGTGTAATCAGCAT 41004607 Score = 93.3 bits (102), Expect = 4e-14 Identities = 183/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| ||||| |||| | || || ||| ||||||||||| || || || | Sbjct 31765830 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 31765771 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 | ||| || | || | |||||||| ||| || || ||||| || || || ||||| || Sbjct 31765770 CTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAAC 31765711 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || || |||||||||| | | ||| | |||||||| ||| Sbjct 31765710 TGCGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCA 31765651 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 | | |||| | | ||| | ||||| || || || || | | || | | Sbjct 31765650 GATAATCTGATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGTCTGCGAGC 31765591 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || |||| || || ||||||| Sbjct 31765590 TGATCAAAGCCTTGGCTAGTGTAATCAGCAT 31765560 Score = 93.3 bits (102), Expect = 4e-14 Identities = 183/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| ||||| |||| | || || ||| ||||||||||| || || || | Sbjct 31809911 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 31809970 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 | ||| || | || | |||||||| ||| || || ||||| || || || ||||| || Sbjct 31809971 CTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAAC 31810030 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || || |||||||||| | | ||| | |||||||| ||| Sbjct 31810031 TGCGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCA 31810090 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 | | |||| | | ||| | ||||| || || || || | | || | | Sbjct 31810091 GATAATCTGATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGTCTGCGAGC 31810150 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || |||| || || ||||||| Sbjct 31810151 TGATCAAAGCCTTGGCTAGTGTAATCAGCAT 31810181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441319029758640