Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq13 120 2e-22 seq7 116 3e-21 seq4 105 5e-18 seq17 104 2e-17 seq5 100 2e-16 seq103 87.8 1e-12 seq91 87.8 1e-12 seq18 84.2 2e-11 >seq13 Length=83567108 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || ||||| |||||||| ||||||||| ||||||||||| || Sbjct 48378064 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 48378123 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | | |||| |||| ||||| ||||| || ||||| |||||||||||| || Sbjct 48378124 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGGG 48378183 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCG 34077 | || || |||||| | | || |||| || | | | | || | |||||| Sbjct 48378184 ATGCCTTCCTTGTCC-TGGATCTTGGCTT--TGACATTGTCGATCGTGTCTGATGATTCG 48378240 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 48378241 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 48378293 >seq7 Length=28547970 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || ||||||| |||||||| ||||||||| |||||||| || || Sbjct 12159604 CCTCCTCTCAGACGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 12159663 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| |||| ||||| ||||| |||||||| |||||||| ||| ||| Sbjct 12159664 AGCGTCCTCCCGTCCTCCAGCTGCTTCCCGGCGAATATCAGACGCTGCTGGTCCGGCGGG 12159723 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || |||||| ||| || ||| || | || | | || | |||||| Sbjct 12159724 ATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTG---TCGATCGTGTCGGATGATTCG 12159780 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||||||||| ||||||||| Sbjct 12159781 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 12159834 >seq4 Length=33175494 Score = 105 bits (116), Expect = 5e-18 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || || ||||| ||||| || ||||||||| ||||||||||| | | Sbjct 4746187 CCTCCCCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCG-C 4746245 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | |||| | |||| |||| ||||| ||||| || ||||| |||||||||||| || Sbjct 4746246 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGG 4746305 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || || |||||| || || ||| || | || | | || | ||||| Sbjct 4746306 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTG---TCGATCGTGTCGGATGATTC 4746362 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | ||||| || || || ||||| |||||||||||||| | |||||| Sbjct 4746363 GACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTACATTTT 4746416 >seq17 Length=44223734 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || |||||||| |||||||| ||||||||| |||||||| || ||| Sbjct 26221181 CCTCCTCTCAGGCGTAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 26221240 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| || | ||||| ||||| || ||||| |||||||| ||| ||| Sbjct 26221241 AGCGTCCTCCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCGGG 26221300 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || |||||| || || ||| || | || | | || | |||||| Sbjct 26221301 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG---TCGATCGTGTCGGATGATTCG 26221357 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || || || |||||||| ||||| ||||||||| Sbjct 26221358 ACCTCTAGGGTTATCGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATTTTT 26221411 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| |||| ||||| |||||| ||| |||||||||||||||||| || || Sbjct 34300682 ACCTCCACGCAGACGCAACACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGC 34300623 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || | || || | |||||||||||||| |||| |||||||| ||| Sbjct 34300622 CAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCC 34300568 >seq5 Length=38841276 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || | ||| |||||||| || |||||||||||||||||| || ||| Sbjct 24922246 CCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCC 24922187 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || ||||| |||||||||||||| |||| |||||||| || ||| Sbjct 24922186 AATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGGG 24922127 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 24922126 ATTCCCTCCTTGTCC 24922112 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || |||| |||||||| ||||||||| |||||||| || ||||| || | Sbjct 24217353 AGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTC 24217294 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||||||||| || || || | |||||||||| || | | ||| Sbjct 24217293 CCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCC 24217234 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 || ||| ||| || ||||| | | | || | || | || |||| || Sbjct 24217233 TTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTC-GGAGCTCTCCACCTCGAGGGT 24217175 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||||||| || |||||||| ||||| ||||| Sbjct 24217174 GATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 24217136 >seq103 Length=295709 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | || |||| |||| |||||||| ||| |||||||||||||| || | Sbjct 165376 AACCACCACGGAGACGCAAGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAG 165317 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | | || | || || | |||||||| ||||| || || |||||||| ||| | Sbjct 165316 CTAGTGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAG 165257 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TC 34076 | | || |||||||||| | | |||| |||| | || | | |||| || | || Sbjct 165256 GAATGCCCTCTTTGTCC-TGAATTTTAGCTTTGACGTTGTCAATGGTGTCAG-AGCTCTC 165199 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || |||||||| || || ||||||||||| ||||| Sbjct 165198 AACTTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCAT 165148 >seq91 Length=316697 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | || |||| |||| |||||||| ||| |||||||||||||| || | Sbjct 307499 AACCACCACGGAGACGCAAGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAG 307440 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | | || | || || | |||||||| ||||| || || |||||||| ||| | Sbjct 307439 CTAGTGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAG 307380 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TC 34076 | | || |||||||||| | | |||| |||| | || | | |||| || | || Sbjct 307379 GAATGCCCTCTTTGTCC-TGAATTTTAGCTTTGACGTTGTCAATGGTGTCAG-AGCTCTC 307322 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || |||||||| || || ||||||||||| ||||| Sbjct 307321 AACTTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCAT 307271 >seq18 Length=77673080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||| ||||| |||||| ||| |||||| ||||||||||| || || Sbjct 47092682 CCTCCACGCAGACGCAACACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCT 47092623 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||| || || || || || ||||||||| || Sbjct 47092622 AAGGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAGGG 47092563 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | || || |||||| || || ||||| | | | | | || | || | || Sbjct 47092562 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTATCAATAGTGTC-GGAGCTCTCCAC 47092504 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | |||||| || || || || ||||| || || ||||| ||||| Sbjct 47092503 CTCTAGCGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCAT 47092456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||| ||||| |||||| ||| |||||| ||||||||||| || || Sbjct 47106803 CCTCCACGCAGACGCAACACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCT 47106862 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||| || || || || || ||||||||| || Sbjct 47106863 AAGGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAGGG 47106922 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | || || |||||| || || ||||| | | | | | || | || | || Sbjct 47106923 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTATCAATAGTGTC-GGAGCTCTCCAC 47106981 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | |||||| || || || || ||||| || || ||||| ||||| Sbjct 47106982 CTCTAGCGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCAT 47107029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||| ||||| |||||| ||| |||||| ||||||||||| || || Sbjct 47110263 CCTCCACGCAGACGCAACACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCT 47110322 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||| || || || || || ||||||||| || Sbjct 47110323 AAGGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAGGG 47110382 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | || || |||||| || || ||||| | | | | | || | || | || Sbjct 47110383 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTATCAATAGTGTC-GGAGCTCTCCAC 47110441 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | |||||| || || || || ||||| || || ||||| ||||| Sbjct 47110442 CTCTAGCGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCAT 47110489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397015237176292