Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq16 127 2e-24 seq18 122 1e-22 seq2 122 1e-22 seq8 109 7e-19 seq6 102 1e-16 >seq16 Length=18736220 Score = 127 bits (140), Expect = 2e-24 Identities = 190/269 (71%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| | ||||| || || || |||||| || || |||||||| || Sbjct 836940 GTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 836881 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| |||| || || |||||||||||||| || ||||| || Sbjct 836880 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 836821 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||||| | || | ||| ||||||| | || | ||| | |||| |||| || Sbjct 836820 AGCAAACGCCACGATCCTCTCGGCAAAGGCCTGTGA---TCCGTCGATCCACGTCATGGC 836764 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| || ||||| ||| ||| || |||| |||| |||||| ||||| | | | | Sbjct 836763 CCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCT 836704 Query 126298 TTCTGATGGATCTTTGATGTACTTATCTA 126326 ||| ||| |||||||| |||||| Sbjct 836703 CTCTCTATTATCCTTGATGTAAGTATCTA 836675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | || || |||||| || || |||||||| || || ||| Sbjct 7908958 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTC 7908899 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | | |||| |||| ||| || || ||||||||||| | || || || ||||| Sbjct 7908898 TTGAGCAAGAAGATCGTACAGAAGCTGCCGGAGAAGAAGATCCTTTCGACGCAGGCGAAG 7908839 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || | ||| || |||| | || | ||| | |||| |||||| |||||| Sbjct 7908838 GCGACGATTCTCTCCGCGAAGGTCTGAGA---TCCGTCGATCCACGTCATCGACCACTGA 7908782 Query 126245 GCCTTTTTCTCGATACACGGGACG 126268 || || ||| ||| || || ||| Sbjct 7908781 GCTTTCTTCACGAAGCAAGGAACG 7908758 >seq18 Length=77673080 Score = 122 bits (134), Expect = 1e-22 Identities = 191/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| | ||||| || || || |||||| || || |||||||| || Sbjct 68188297 GTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCGGGCATGAGCCC 68188356 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| |||| || || ||| ||||||||||| || ||||| || Sbjct 68188357 TCGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 68188416 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 |||||| || | || | ||| || || | | ||| || | |||| |||| || Sbjct 68188417 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGAC---CCATCGATCCACGTCATGGC 68188473 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| || ||||| ||| ||| || |||| ||||| |||||| ||||| | | | | Sbjct 68188474 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATCGCGCGGAAGAGATGGTCCCT 68188533 Query 126298 TTC--TGATGGATCTTTGATGTACTTATCTA 126326 || || || || ||||||||| | |||| Sbjct 68188534 CTCCTTGTTG--TCCTTGATGTACGTGTCTA 68188562 >seq2 Length=25468329 Score = 122 bits (134), Expect = 1e-22 Identities = 191/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 22243733 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 22243792 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || || || ||||||||||| || ||||| || Sbjct 22243793 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22243852 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 |||||| || | || | ||| || || | | || | ||| | |||||||| || Sbjct 22243853 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCAAGGC 22243909 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 22243910 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 22243969 Query 126298 TTC--TGATGGATCTTTGATGTACTTATCTA 126326 || || || || ||||||||| |||||| Sbjct 22243970 CTCCTTGTTG--TCCTTGATGTACGTATCTA 22243998 >seq8 Length=29345952 Score = 109 bits (120), Expect = 7e-19 Identities = 326/496 (66%), Gaps = 14/496 (3%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || ||||| | || | |||| |||||| |||||| | || || || Sbjct 28985217 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 28985158 Query 10847 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903 || | |||| | || || |||| ||||| |||||||||||||||||||| ||| Sbjct 28985157 GCAACAACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 28985101 Query 10904 TTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTA 10960 || | || || || | ||||||||| | | | || ||| | | || ||| || Sbjct 28985100 TTCAAAGTCTGCTCTCTTTCATCATTACCTCCACCAATCCCAGTCCCTCT---CTGCCTA 28985044 Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 11020 || || || ||||| || || | || || |||||||| ||| ||| || | Sbjct 28985043 CCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCATTAGCCTTATTG 28984984 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG 11080 || | ||| || || ||| ||||| ||||| |||||||| || ||||| | | | Sbjct 28984983 AAAAGATCACGCACCCTCGAAGCACCAACACCAACAAACATCTCAACAAACTCAGACCCC 28984924 Query 11081 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11139 | | || | || ||| || || || |||||| || |||||| ||| | ||| || || Sbjct 28984923 G-AGATGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGAGTTTT 28984865 Query 11140 CCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAA 11199 || || ||||| || ||||||| |||| ||||||| ||||| || Sbjct 28984864 ACCAGTACCAGGAGGACCAACGAGAAGAACACCTTTAGGGATCCGAGCACCGACCGCAGT 28984805 Query 11200 GTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCAGCGTC 11259 | | | |||||| | || || || ||||| | ||| || |||| ||| || | || Sbjct 28984804 GAACCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATGAAGTCATGCTTGGCTTCATC 28984745 Query 11260 GATGCCTTCAACGTCA 11275 || || |||| ||| Sbjct 28984744 GACTCCAGCAACATCA 28984729 >seq6 Length=38054609 Score = 102 bits (112), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| || ||||| | || || |||||| | || |||||||| || Sbjct 29820143 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCC 29820084 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| |||| || || || ||||||||||| || ||||| || Sbjct 29820083 TCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 29820024 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||||| | || | ||| || || | | || | ||| | |||| |||| || Sbjct 29820023 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATGGC 29819967 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| || ||||| ||| ||| || || | ||| | ||||| Sbjct 29819966 CCATTGGGCCTTCTTCGCGACGCAAGGTATGGTTTCAATCGC 29819925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597280827397680