Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq9 282 5e-71 seq14 199 5e-46 seq8 109 7e-19 seq28 91.5 2e-13 >seq9 Length=62778564 Score = 282 bits (312), Expect = 5e-71 Identities = 449/638 (70%), Gaps = 7/638 (1%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTG---A 6319 |||| | | || | ||| || || || |||| |||| || ||||||||| || || | Sbjct 56234314 AGAGTGCTTCCACGTGGTAAAACCTCCTCAGTGAATATAATGTTTTCATGAGGCTGCTGA 56234373 Query 6320 TCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAAC 6379 ||| | |||||||| | || | |||||| || || || || || || |||||||| Sbjct 56234374 TCCTGAGCCGCCATCCAAGTGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAA 56234433 Query 6380 GTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTA 6439 || || || || ||||| |||||||| | || ||||| |||| ||| |||| || | Sbjct 56234434 GTTTC-AAGTCCGGATCTTCCGCTGCACAAATTTCTTGGGAAATGAAGCCATAGGCACAT 56234492 Query 6440 AGGTTAAGTGCAAGACCAA-TAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAAC 6498 ||||| | || ||||| | || ||| | || | ||| | ||| | || || || Sbjct 56234493 AGGTTCAAAGCTAGACCTACTATTACAAGAGC-ACTCATCCTTAAACCAGTTACTGGTAC 56234551 Query 6499 AAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGA 6558 ||| | ||||||||| |||| |||| | |||||| || || |||||||| | || Sbjct 56234552 AAATAACATAAAGAATTGTAACCAATGTTTATTGGAAAAAGCAGCCCCAAAGATTCGTGA 56234611 Query 6559 CCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGC 6618 ||| || || ||||| |||||||| ||||| || || || |||| | || | ||| || Sbjct 56234612 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAATTGGGTTAAAAGC 56234671 Query 6619 CTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTAT-TCTCTACAGTAGCACCGT 6677 || |||||| ||||||| |||| | ||| || | |||||||||||||| | Sbjct 56234672 ACATAATTTATTTGCACCATCACCATTTTCAGATAAAAAATATTTCTACAGTAGCACCAT 56234731 Query 6678 GAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGT 6737 |||||| || | || || | || | | ||| || | ||||||| |||||| | | Sbjct 56234732 CAATAGCGCATAACAGAGCCGCGCCAAGTACACCGGCAATTCCCATCAAATGAAATGAAT 56234791 Query 6738 TGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACAC 6797 | || | ||| || || || || || | ||||| | ||| || ||||| || || |||| Sbjct 56234792 TCAGTGCCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 56234851 Query 6798 CAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACA 6857 |||| ||| ||||||||||| || || || || ||||| || |||||||| || | Sbjct 56234852 CAAAACTAGGCACAAAGAACCAATCAGATTGACCTAGTGGATAAATTAGAAAGACTGAAA 56234911 Query 6858 CAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTG 6895 |||| |||||||| |||||||| || | ||||| |||| Sbjct 56234912 CAAAAACAGCAATTGGACCAGAGAATGTGATTGTATTG 56234949 Score = 96.9 bits (106), Expect = 4e-15 Identities = 213/304 (70%), Gaps = 13/304 (4%) Strand=Plus/Minus Query 8121 GAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACT 8180 |||| || ||||| ||| ||||| ||||||||||| |||||| || ||||||||||| Sbjct 10191027 GAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACT 10190968 Query 8181 CACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAG-GA 8239 |||||||||| || | | ||| | | ||||| | | || |||| ||| | Sbjct 10190967 CACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGCAA 10190908 Query 8240 CCACCGTTGTAGAGCCA-CTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAG 8298 |||| ||||| ||||| ||||||| || || |||| |||||||| || || || | Sbjct 10190907 CCACGTTTGTATAGCCATTTCATCAACGGATGCAGCTT-CCAGATGGCGTAAAAATGCAA 10190849 Query 8299 ACCA-ATAG-CGTTAGA-AGAAGGAACAACAGCACCAGAGATGATGTTGTT--GCCATAC 8353 |||| |||| | | ||| || || || || ||||| || | || ||||| || || Sbjct 10190848 ACCACATAGCCCTGAGACAGTAGAAATAA-TGCACCGGAACTAATATTGTTTCACCTTAA 10190790 Query 8354 ATGAGCGAACCAG-CGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGG-AGCAGCGA 8411 | || | ||||| || ||||||| || | ||||| || || |||| |||||| | Sbjct 10190789 AGAAGAG-ACCAGAAAACAGGTTCAC-AATACACTCAATATCTACTAGAGGAAGCAGCAA 10190732 Query 8412 CGAA 8415 ||| Sbjct 10190731 TGAA 10190728 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| ||||||| |||| || || ||| | |||||||||||||| ||||| Sbjct 18476934 GTAGGATAAGCCGCACAGGTGAGAACAAACCCTGCAGCAATCTGGTCATCATCGAGGAAA 18476993 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || ||| || | | ||| |||||||| ||||| || | | Sbjct 18476994 CTCTGGTCAGACTGGTCAACAAAACCAGACACAACTTTACCTGCACAGCTCGAGCAAGAA 18477053 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 || || ||||| ||||| | ||| || |||||||| || ||||| || || | ||| Sbjct 18477054 CCGGCACGGCAAGAGTAAGGCAAGTCGATCCCTGCTTCCTCCGCAGCGTCGAGGACGTAA 18477113 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 18477114 ACGTCGTCGTCGCACTCAA 18477132 >seq14 Length=28343526 Score = 199 bits (220), Expect = 5e-46 Identities = 214/283 (76%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 7911 TTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCA 7970 |||| || |||| |||||| ||||| || ||||| || || || |||||||| || || | Sbjct 20845281 TTACCAGGGAACTATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTA 20845222 Query 7971 GCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGA 8030 |||||| || |||||||| || ||||||||||| | |||||| |||| ||| |||||| Sbjct 20845221 ACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGA 20845162 Query 8031 ACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGA 8090 | ||||||||||| || ||||||||| ||||| ||| |||||| | | || ||| Sbjct 20845161 AAGTACCAGAGATTCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGA 20845102 Query 8091 CGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGAC 8150 | ||| ||| || || | ||||| ||| | || ||||| ||| ||||| |||| Sbjct 20845101 TCAAGAAAACACCAATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGAC 20845042 Query 8151 GCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 | ||||| |||| | || |||||||||||||| | |||| || Sbjct 20845041 GTATACCCAGACAGAAACTAAGTTCCCACTCACAATCCATATA 20844999 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| |||| || |||| ||| || || | |||||||||||||| ||||| Sbjct 23727365 GTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCAGCAATCTGGTCATCATCGAGGAAA 23727306 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| |||||||| || || || | | Sbjct 23727305 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCTGCACAGCTGGAGCAAGAA 23727246 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | ||| || || ||||| |||||||| || || | ||| Sbjct 23727245 CCAGCACGGCAAGAGTAAGGCAAGTCGATTCCGGCTTCCTCAGCAGCGTCGAGGACGTAG 23727186 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 23727185 ACGTCGTCGTCGCACTCAA 23727167 >seq8 Length=29345952 Score = 109 bits (120), Expect = 7e-19 Identities = 117/151 (77%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 7906 AGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGAC 7965 ||| ||| ||| |||| |||||| ||||| || || || || || || |||||||| || Sbjct 6844820 AGAAGTTCCAAA-GAACTATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTAC 6844762 Query 7966 GCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTA 8025 || | ||| ||| ||||||| || ||||||||||| || ||||| |||| ||| | Sbjct 6844761 ACCTAACATT--GAAATGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAA 6844704 Query 8026 GTTGAACGTACCAGAGATGCCAAGAGGCATA 8056 |||||| ||||||||||| | ||||||||| Sbjct 6844703 GTTGAAAGTACCAGAGAT-TCTAGAGGCATA 6844674 >seq28 Length=1539140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 10253 GATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATT 10312 |||||| |||| || |||| ||| || | | |||||||||||||| ||||| | Sbjct 841512 GATAAGCCGCACAAGTGAGAACGAATCCTTCCGCAATCTGGTCATCATCGAGGAAACTCT 841571 Query 10313 GATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAG 10372 | || || || || | || || | | ||| |||||||| ||||| |||| ||||| Sbjct 841572 GGTCAGACTGGTCAACAGATCCAGACACAACTTTACCTGCACAGCTCGAGCAGGAACCAG 841631 Query 10373 CTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGAT 10432 | ||||| ||||| | ||| || || ||||| |||||||| || || | ||| | Sbjct 841632 CACGGCAAGAGTAAGGCAAGTCGATTCCGGCTTCCTCAGCAGCGTCAAGGACGTAGACGT 841691 Query 10433 CGTCAGCACACTCAA 10447 |||| | ||||||| Sbjct 841692 CGTCGTCGCACTCAA 841706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622049009646240