Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq18 132 6e-26 seq16 123 3e-23 seq2 122 1e-22 seq8 114 2e-20 seq6 102 1e-16 >seq18 Length=77673080 Score = 132 bits (146), Expect = 6e-26 Identities = 389/588 (66%), Gaps = 15/588 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| | ||||| || || || |||||| || || |||||||| || Sbjct 68188297 GTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCGGGCATGAGCCC 68188356 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| |||| || || || |||||||||||||| ||||| || Sbjct 68188357 TCGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 68188416 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||| || | | | |||||| || | ||||| ||| | |||| |||| || Sbjct 68188417 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGAC---CCATCGATCCACGTCATGGC 68188473 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| ||||| |||||| ||||| | | | | Sbjct 68188474 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATCGCGCGGAAGAGATGGTCCCT 68188533 Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACC 127828 || || || || ||||||||| | |||| || || | ||| ||||| Sbjct 68188534 CTCCTTGTTG--TCCTTGATGTACGTGTCTAACAGGAGGCTGTACATCTCGGAGTGGATG 68188591 Query 127829 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 | || | | ||| || ||||||| | |||||| ||| | ||| || || | Sbjct 68188592 TTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGACCTGGACGTC--GG 68188649 Query 127889 GCA-AAATTGTTA-TTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 127946 || || || | || ||||| | || ||||| ||||| | || || || || | Sbjct 68188650 ACATGAACCGTGAGGCGAGGTTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCGA 68188709 Query 127947 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAG-ATCC 128005 ||| | || ||||| | | || ||||| || ||| ||||||| || | ||| Sbjct 68188710 GGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAGATTCTCCCAGTCG-CGTGTGTCC 68188768 Query 128006 TTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCC 128065 | ||||| || || ||||| || ||||| | | |||||||| || | ||| Sbjct 68188769 TGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCC 68188828 Query 128066 CAGAGGTGGGGATACTTCAGGGGGAACACTGTA-AATCTGTTTAGGGT 128112 |||| || || || | | ||||||| || | ||||||| | |||| Sbjct 68188829 CAGATCTGCGGGTATTGGATTGGGAACA-TGCAGAATCTGTCTGGGGT 68188875 >seq16 Length=18736220 Score = 123 bits (136), Expect = 3e-23 Identities = 189/269 (70%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| | ||||| || || || |||||| || || |||||||| || Sbjct 836940 GTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 836881 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| |||| || || || |||||||||||||| ||||| || Sbjct 836880 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 836821 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || ||||| | | | ||||||||||| | || | || | |||| |||| || Sbjct 836820 AGCAAACGCCACGATCCTCTCGGCAAAGGCCTGTGA---TCCGTCGATCCACGTCATGGC 836764 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| |||| |||||| ||||| | | | | Sbjct 836763 CCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCT 836704 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTA 127799 ||| ||| |||||||| |||||| Sbjct 836703 CTCTCTATTATCCTTGATGTAAGTATCTA 836675 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | || || |||||| || ||| |||||||| || || ||| Sbjct 7908958 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTC 7908899 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | | |||| |||| ||| || ||| ||||||||||||| || || || ||||| Sbjct 7908898 TTGAGCAAGAAGATCGTACAGAAGCTGCCGGAGAAGAAGATCCTTTCGACGCAGGCGAAG 7908839 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | | ||| || |||| | || | || | |||| |||||| |||||| Sbjct 7908838 GCGACGATTCTCTCCGCGAAGGTCTGAGA---TCCGTCGATCCACGTCATCGACCACTGA 7908782 Query 127718 GCCTTTTTCTCGATACATGGGACG 127741 || || ||| ||| || || ||| Sbjct 7908781 GCTTTCTTCACGAAGCAAGGAACG 7908758 >seq2 Length=25468329 Score = 122 bits (134), Expect = 1e-22 Identities = 191/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 22243733 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 22243792 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || || |||||||||||||| ||||| || Sbjct 22243793 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22243852 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||| || | | | |||||| || | | || | || | |||||||| || Sbjct 22243853 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCAAGGC 22243909 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 22243910 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 22243969 Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTA 127799 || || || || ||||||||| |||||| Sbjct 22243970 CTCCTTGTTG--TCCTTGATGTACGTATCTA 22243998 >seq8 Length=29345952 Score = 114 bits (126), Expect = 2e-20 Identities = 326/496 (66%), Gaps = 14/496 (3%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| | || | |||| |||||| |||||| | || || || Sbjct 28985217 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 28985158 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || | |||| | || || |||| || || |||||||||||||||||||| ||| Sbjct 28985157 GCAACAACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 28985101 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGT---TGCTTA 12875 || | || || || | ||||||||| | |||| | || | | | ||| || Sbjct 28985100 TTCAAAGTCTGCTCTCTTTCATCATTACCTCC---ACCAATCCCAGTCCCTCTCTGCCTA 28985044 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 || || || ||||| ||||| | || || |||||||| ||| ||| || | Sbjct 28985043 CCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCATTAGCCTTATTG 28984984 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | ||| ||||| ||| ||||| ||||| ||||||||||| ||||| | | | Sbjct 28984983 AAAAGATCACGCACCCTCGAAGCACCAACACCAACAAACATCTCAACAAACTCAGACCCC 28984924 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 | | || | || ||| || || || |||||| || |||||| ||| | ||| || || Sbjct 28984923 G-AGATGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGAGTTTT 28984865 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAA 13114 || || || || || ||||||| |||| ||||||| ||||| || Sbjct 28984864 ACCAGTACCAGGAGGACCAACGAGAAGAACACCTTTAGGGATCCGAGCACCGACCGCAGT 28984805 Query 13115 GTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTC 13174 | | | ||| || | || ||||| ||||| | ||| || |||| ||| || | || Sbjct 28984804 GAACCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATGAAGTCATGCTTGGCTTCATC 28984745 Query 13175 GATGCCTTCAACGTCA 13190 || || |||| ||| Sbjct 28984744 GACTCCAGCAACATCA 28984729 >seq6 Length=38054609 Score = 102 bits (112), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| | || || |||||| | || |||||||| || Sbjct 29820143 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCC 29820084 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| |||| || || || |||||||||||||| ||||| || Sbjct 29820083 TCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 29820024 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || ||||| | | | |||||| || | | || | || | |||| |||| || Sbjct 29820023 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATGGC 29819967 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || ||||| ||| ||| || || | ||| | ||||| Sbjct 29819966 CCATTGGGCCTTCTTCGCGACGCAAGGTATGGTTTCAATCGC 29819925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613432459485360