Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq16 205 1e-47 seq6 181 2e-40 seq2 181 2e-40 >seq16 Length=18736220 Score = 205 bits (226), Expect = 1e-47 Identities = 420/618 (68%), Gaps = 10/618 (2%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| ||||| || || |||| | || || | ||||| | | || || | Sbjct 837226 TCTTCTCGAAGAAGTTCGTTTTACCCTGAAGCGAGATCAACTCCATCCAATCAAACGGAT 837167 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | || || || ||| |||||| || |||||||| | Sbjct 837166 TCGCCACACCGTACACCTTCCCGTACCCAAGCGCTCCCAACAACCTATCCGCCACAAACT 837107 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | || || || |||| | |||| ||| ||||||| || | | ||||| ||||| || Sbjct 837106 CAATATACTGACTCATCAGTTCACTGTTCATCCCCACCAACGCGCACGGG-AGCGCGTCG 837048 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| ||||||| |||| ||||| ||||| ||| ||| ||| | || || || | | Sbjct 837047 CACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCTCACGCGCTCCTCC 836988 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| | | | || | | |||| ||||| |||||||||||||| || Sbjct 836987 GAGAGCTTCGTCCTCAGGAGGGAGTAGATCAGG---CACGCGAAGTCGCAGTGCAGGCCT 836931 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| | ||||| | ||||||||| | | |||| |||||||||| ||||||| ||| Sbjct 836930 TCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTCTTG 836871 Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || || | ||| |||| || | | || |||||||| |||||| |||||||| Sbjct 836870 AGCCAGAAGATCG-AGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCAAGCAAACGC 836812 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| |||||| ||| |||| | | | | | ||||| | ||||||||| || Sbjct 836811 CACGATCCTCTCGGCAA---AGGCCTGTGATCCGTCGATCCACGTCATGGCCCATTGGGC 836755 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| |||| ||| || || ||||| ||| || | |||| ||| | Sbjct 836754 CTTCTTCGCGACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTCTCTATT 836695 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 ||||||||| |||| | | ||| |||||| || | ||| | || ||||| || Sbjct 836694 ATCCTTGATGTAAGTATCTAACAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATCGC 836635 Query 160246 CATCTGAAAGTTGTAGAA 160263 ||||| || |||||| Sbjct 836634 GATCTGGAACCCGTAGAA 836617 >seq6 Length=38054609 Score = 181 bits (200), Expect = 2e-40 Identities = 551/839 (66%), Gaps = 23/839 (3%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| ||||| || || |||| | || || | ||||| | | || || | Sbjct 29820429 TCTTCTCGAAGAAGTTCGTTTTCCCCTGAAGCGAAATCAACTCCATCCAATCAAACGGAT 29820370 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | || || || ||| | ||| || |||||||| | Sbjct 29820369 TCGCCACACCGTACACCTTCCCGTACCCAAGCGCGCCCAAAAGCCTATCCGCCACAAACT 29820310 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | || || || |||| | |||| || ||||||| || | | |||| ||||| || Sbjct 29820309 CAATATACTGACTCATCAGATCACGATTCATCCCCACCAACGCGCACGGA-AGCGCGTCG 29820251 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| ||||||| |||| ||||| ||||| ||| |||||| | || || || | | Sbjct 29820250 CACACAAACTCCCTCTCGATCTCCACCGCGTCGCAAACAATCGACTTCACGCGCTCCTCC 29820191 Query 159887 CCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 |||| | || ||| || | | | |||||||| ||||||||||| || || Sbjct 29820190 GTGAGCTTCGTCCTCAATAGAGT----ATAGATCAGGCACGCGAAGTCGCAGTGAAGGCC 29820135 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 ||||| |||||||| ||||||||||| | | | | || ||||||| ||| ||| || Sbjct 29820134 TTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTCTT 29820075 Query 160006 GAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 ||||| || || | ||| |||| ||| || |||||||| |||||| ||||||| Sbjct 29820074 CAGCCAGAAGATCG-AGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAAGCAAACG 29820016 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 |||||| |||||| | ||| | | | | | | ||||| | ||||||||| | Sbjct 29820015 CCACGATCCTCTCGGCGAAA---GTCTGAGATCCGTCGATCCACGTCATGGCCCATTGGG 29819959 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| |||| ||| || ||| || | ||| || | |||| ||| || Sbjct 29819958 CCTTCTTCGCGACGCAAGGTATGGTTTCAATCGCGCGGAAGAGGTGGTCCCTCTCTTTAT 29819899 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 ||||||||| || | | ||| |||||| |||| ||| | ||| || || | Sbjct 29819898 TATCCTTGATGTACGTGTCGAGCAGGAGGCTGTACATCTCTGAGTGGATATTCTCAATCG 29819839 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTT 160303 | ||||| || |||||| ||||| | || || ||||| || |||||| Sbjct 29819838 CGATCTGGAACCCGTAGAAGGCACGCGCCT-CGGAGACTTGCACGTCGGACATGAACCGG 29819780 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | ||||| | ||| | ||||||| || || ||||| || | ||||| | Sbjct 29819779 GAGGCGAGATTCTCTAAAACGATTCCGTCGGATGCGGCGAAGAAGGCGAGGACGTGTTTG 29819720 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT---GTGTCACGTCTTGGGCC 160420 ||||| || | ||| | | |||||| || ||||||| | || |||||||| Sbjct 29819719 ATGAAGTGGCGCTCTCCGTCGTTGAG---ATTCTCCCAGTCGCGAGT---GTCTTGGGAG 29819666 Query 160421 AAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | ||| || ||||| ||| |||| | |||| || | |||||||| ||||||| Sbjct 29819665 AGATCGACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTCCCAGAT 29819607 >seq2 Length=25468329 Score = 181 bits (200), Expect = 2e-40 Identities = 552/842 (66%), Gaps = 26/842 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || || || || |||| | || || | ||||| | | || || | Sbjct 22243447 TCTTCTCGAAGAAATTCGTTTTACCCTGAAGCGAGATCAACTCCATCCAATCAAACGGAT 22243506 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | || || || ||| | ||| || |||||||| | Sbjct 22243507 TCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCCAAAAGCCTATCCGCCACAAACT 22243566 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 | || || || |||| || | ||| ||||||| || | ||| ||||| || Sbjct 22243567 CAATATACTGACTCATCAAGTCCCGGTTCATCCCCACCAACGCGCAGGGAAGCGCGTCGC 22243626 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||||||| |||| ||||| ||||| ||| ||| ||| | || || || | | Sbjct 22243627 ACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCCTCCG 22243686 Query 159888 CCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| | || || ||| | | | |||||||| ||||||||||| || || Sbjct 22243687 ATAGCTTCGTCCTCAACAAGGT----ATAGATCAGGCACGCGAAGTCGCAGTGAAGGCCT 22243742 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 |||||||| ||||| | ||||||||| | | |||| |||||||||| ||| ||| ||| Sbjct 22243743 TCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCTCGCTTCTTG 22243802 Query 160007 AGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || |||| ||| |||| ||| || |||||||| |||||| ||| || || Sbjct 22243803 AGCCAGAAGATGG-AGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCACGCGAAGGC 22243861 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| |||||| | ||| | | | | | | ||||| | |||||||| || Sbjct 22243862 CACGATCCTCTCGGCGAAA---GTCTGAGATCCGTCGATCCACTTCAAGGCCCATTGGGC 22243918 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| |||| ||| || ||| ||| | ||| || | |||| |||||| Sbjct 22243919 CTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTCCTTGTT 22243978 Query 160186 ATCCTTGAT---CAGA-GTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 |||||||| | | |||||| ||| |||||| || | ||| | ||| || | Sbjct 22243979 GTCCTTGATGTACGTATCTAGCAAGAGGCT----GTACATCTCCGAGTGGATATTCTCAA 22244034 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAAC 160300 | || ||||| || |||||| |||||| ||| |||||| || ||||| Sbjct 22244035 TCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGA-CCTGCACGTCGGACATGAAC 22244093 Query 160301 CTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 | | ||||| | || | ||||||| ||| || ||||| || | ||||| Sbjct 22244094 CGGGAGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGT 22244153 Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT---GTGTCACGTCTTGG 160417 |||||| || | |||| | | |||||| | | ||||||| | || ||||||| Sbjct 22244154 TTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTGGTCTCCCAGTCGCGGGT---GTCTTGG 22244210 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAG 160477 | | || || || || ||| |||| || || | || | |||||||| ||||| Sbjct 22244211 GAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAG 22244270 Query 160478 AT 160479 || Sbjct 22244271 AT 22244272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795058330217760