Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 4e-13 seq5 86.0 4e-12 seq17 82.4 5e-11 seq13 82.4 5e-11 >seq10 Length=22354415 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || || | ||| | ||| || ||||| || || ||||| || Sbjct 21870109 CCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAATCCGCG 21870050 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||| || ||||| | || || | | |||||| || | || Sbjct 21870049 AGAGTGCGACCATCCTCCAGCTGCTTCCCTGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 21869990 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT-GTGTCTGCGCTTTCCAC 39671 | |||||| || || || ||| ||| | ||| | | | ||||| | ||| || || Sbjct 21869989 ATGCCTTCCTTCTCCTGAATCTTTGCTTTGA-CGTTGTCAATCGTGTCAGAGCTCTCAAC 21869931 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||||||||||||| || || || || || ||||||||||| Sbjct 21869930 CTCCAAGGTAATTGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 21869883 >seq5 Length=38841276 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| || | ||| ||||| || || || ||||| || Sbjct 24217591 GCCTCCACGTAGACGCAAGACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGC 24217532 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| ||||| || || ||| |||| || || | |||||| |||| || Sbjct 24217531 CAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 24217472 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || || || || || |||| | ||| || ||||| | ||| || Sbjct 24217471 GATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCAATA--GTGTCAGAGCTCTCA 24217414 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || || || || || || || || || ||||||||||| Sbjct 24217413 ACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 24217364 >seq17 Length=44223734 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||||| |||||||| | |||| || || || || || || || ||| Sbjct 34300681 CCTCCACGCAGACGCAACACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGCC 34300622 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | || || ||| |||| || ||||||||||| |||| || Sbjct 34300621 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGA 34300562 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || ||| | ||| | | | ||||| | || || || Sbjct 34300561 ATACCTTCCTTGTCTTGGATCTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTCTCGAC 34300503 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || ||||| | || || || |||||||||||| Sbjct 34300502 CTCTAGAGTGATCGTCTTTCCCGTCAGTGTCTTGACAAAGATCTGCATG 34300454 >seq13 Length=83567108 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| || | ||| || || || || || || || || Sbjct 62907381 GCCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 62907322 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | | |||| || | || || ||| |||| || || | |||||| |||| || Sbjct 62907321 AAGAGTTCTTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 62907262 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || ||| ||| | | | | ||||| | ||| ||||| Sbjct 62907261 AATACCCTCTTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCAC 62907202 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || ||||| || || || || ||||||||||| Sbjct 62907201 CTCCAAAGTAATAGTCTTTCCCGTCAACGTCTTGACAAAGATCTGCAT 62907154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347328339656018