Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 118 1e-21 seq12 114 2e-20 seq14 113 5e-20 seq17 109 6e-19 seq5 109 6e-19 seq6 100 3e-16 seq16 91.5 2e-13 seq47 82.4 9e-11 seq4 82.4 9e-11 >seq8 Length=29345952 Score = 118 bits (130), Expect = 1e-21 Identities = 327/493 (66%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | || ||||||||||| | | || ||||| Sbjct 28985217 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 28985158 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || | ||||| || Sbjct 28985157 GCAACAACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTC 28985098 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTTCTTACCG 11679 | ||||| || | ||||| || | | |||| || | | | || | |||| Sbjct 28985097 AAAGTCTGCTCTCTTTCATCATT--ACCTCC-ACCAATCCCAGTCCCTCTCTGCCTACCA 28985041 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| |||||||| || | || || |||||||| || || |||| | |||| Sbjct 28985040 ACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCATTAGCCTTATTGAAA 28984981 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || ||||| || | | || |||||||| || ||||||||||| || | | | || Sbjct 28984980 AGATCACGCACCCTCGAAGCACCAACACCAACAAACATCTCAACAAACTCAGACCCCGAG 28984921 Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | || | ||| || ||| | |||||||| |||||| || | |||||| ||||| Sbjct 28984920 -ATGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGAGTTTTACC 28984862 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 |||||||| | |||| ||||||| | || |||||| ||||| || | | Sbjct 28984861 AGTACCAGGAGGACCAACGAGAAGAACACCTTTAGGGATCCGAGCACCGACCGCAGTGAA 28984802 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCTTGGCGGAGTCGA 11977 | ||||||||||||||| || ||||| | ||| | ||| || | |||||| |||| Sbjct 28984801 CCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATGAAG-TCATGCTTGGCTTCATCGA 28984743 Query 11978 TACCCTCAACATC 11990 || ||||||| Sbjct 28984742 CTCCAGCAACATC 28984730 >seq12 Length=60369500 Score = 114 bits (126), Expect = 2e-20 Identities = 296/446 (66%), Gaps = 24/446 (5%) Strand=Plus/Minus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| | | ||| || || |||| || | || ||||| | | || ||| Sbjct 11969660 TCAAGAATATCAGCTCTGTTGGTTGCAGCAACAACGATAACACCAGTGTTACCTTCAAAA 11969601 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC--- 11652 || ||||| || || ||||||||||| | ||||||||| | ||||| || | | Sbjct 11969600 CCATCCATCTCCGTCAGAAGCTGGTTAAGCGTCTGTTCTCTTTCATCATT--ACCTCCAC 11969543 Query 11653 --ATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 |||||| | | | | | |||| ||||| ||||||||||| | || || |||| Sbjct 11969542 CAATACCAGTTCCT---CTTTGCCTACCAACAGCATCAATCTCATCCACAAAGACAATAC 11969486 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 | || ||| | |||| || |||||| ||||| || | | || |||||||| | Sbjct 11969485 AAGGAGCGTTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCGA 11969426 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACAC----TG--AATGAAGGGAACATTAGACT 11824 | ||||||||||| || | |||||| | || || ||| || || || | Sbjct 11969425 CAAACATCTCAACAAACT------CAGAACCCGAGATGGAAAAGAACGGTACGCCAGCTT 11969372 Query 11825 CACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGG 11884 ||||||| ||||| || | ||| || || || ||||| || | |||| | || || Sbjct 11969371 CACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCAGTACCGGGAGGACCAACTAGGAGAA 11969312 Query 11885 CGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCA 11944 | || |||||| ||||| || | | | |||||||||||| || || |||| Sbjct 11969311 CACCTTTCGGGATCCGAGCACCGACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 11969252 Query 11945 CAATCTCC-TCAAGTTCCTCCTTGGC 11969 | | ||| | ||| || | |||||| Sbjct 11969251 CCACTTCCATGAAG-TCTTGCTTGGC 11969227 >seq14 Length=28343526 Score = 113 bits (124), Expect = 5e-20 Identities = 333/505 (66%), Gaps = 34/505 (7%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | ||| ||||||||||| | | ||| || || Sbjct 17773188 CGGTCAAAACGGCCTGGTCTAAGCAAGGCAGAGTCAAGAATATCTGCTCTGTTGGTTGCA 17773129 Query 11563 GCAATGACTACAATG---CCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 |||| |||| ||| ||||| | | || ||||| ||||| || || | ||||| Sbjct 17773128 GCAA---CTACGATGACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGA 17773072 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAA--CGCTT--C 11673 || | ||||||||| | ||||| || | | ||||| | ||| | ||| | Sbjct 17773071 TTAAGCGTCTGTTCTCTTTCATCATTA-----CCT-CCACCAATTCCGGTTCCTCTTTGC 17773018 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 |||| ||||| || || ||||| | || || || || || ||| | |||| | Sbjct 17773017 CTACCAACAGCATCTATTTCATCCACAAAGACAATGCAGGGAGCGTTTTCCTTGGCCTTT 17772958 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 | |||||| ||||| || | || |||||||| |||||||||||||| || | Sbjct 17772957 TTGAAAAGATCACGGACCCTTGAAGCACCAACACCGACGAACATCTCAACAAACT----- 17772903 Query 11794 GCAGAACACTGA-------ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 |||||| |||| | ||| || ||| || |||||||| ||||| || | Sbjct 17772902 -CAGAAC-CTGAGATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAA 17772845 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||| || ||||| |||||||| | |||| | || || | || |||||| ||||| Sbjct 17772844 GAGGGTTTTACCAGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCCGAGCACC 17772785 Query 11907 ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCT 11965 | || | | | |||||||||||| || || ||||| | ||| | ||| || | || Sbjct 17772784 AACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAG-TCTTGCT 17772726 Query 11966 TGGCGGAGTCGATACCCTCAACATC 11990 |||| |||| || ||||||| Sbjct 17772725 TGGCTTCATCGACGCCAGCAACATC 17772701 >seq17 Length=44223734 Score = 109 bits (120), Expect = 6e-19 Identities = 298/453 (66%), Gaps = 20/453 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | ||| ||||||||||| | | || || || Sbjct 43157840 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCTCTATTGGTTGCA 43157781 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || | ||||| || Sbjct 43157780 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 43157721 Query 11623 ATCGTCTGTTCACGCTCATCGTTGG----AGGGCATACCACCTGCCGAACGCTTCTTACC 11678 | |||||| || | ||||| || | | || ||| | || | || | |||| Sbjct 43157720 AGCGTCTGCTCTCTTTCATCATTACCTCCACCG-ATTCCAGTTCCC---CTCTGCCTACC 43157665 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| |||||||| || | || || || ||||| || | |||| || ||| Sbjct 43157664 AACAGCATCAATCTCGTCCACAAAAACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAA 43157605 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 ||| ||||| || | | || |||||||| || ||||||||||| || | |||| Sbjct 43157604 AAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACT------CAGA 43157551 Query 11799 ACAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 || | || || ||| || ||| || |||||||||||||| || | ||| || Sbjct 43157550 ACCCGAGATGGAAAAGAAAGGTACACCAGCTTCACCAGCGATGGCCTTCGCCAAGAGGGT 43157491 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCC 11912 ||||| |||||||| | ||| | || ||| | || |||||| |||||| | Sbjct 43157490 TTTACCAGTACCAGGAGGGCCAACAAGGAGGACACCTTTCGGGATCCGAGCACCAACCGC 43157431 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | | | | |||||||||||| || || ||||| Sbjct 43157430 AGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 43157398 >seq5 Length=38841276 Score = 109 bits (120), Expect = 6e-19 Identities = 276/414 (67%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| | | || || || |||| || | || ||||| | | || || Sbjct 7899589 TCAAGAATATCTGCTCTATTAGTCGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 7899648 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA 11655 || ||||| || || | |||||||| | |||||||| | |||||| || | | | Sbjct 7899649 CCATCCATCTCAGTCAACAGCTGGTTCAAAGTCTGTTCTCTCTCATCATT--ACCTCC-A 7899705 Query 11656 CCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACAC 11712 ||| |||| | | || | | || ||||| ||||||||||| | || ||||| || Sbjct 7899706 CCAATCCCTGTCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAACAAAGACGATGCAA 7899765 Query 11713 GGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACG 11772 || ||| | |||| | |||||| ||||| || | || |||||||| || Sbjct 7899766 GGAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACCCTGGAAGCACCAACACCGACA 7899825 Query 11773 AACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGC 11831 |||||||||||||| | | | | | | ||| | ||| || ||| || |||||||| Sbjct 7899826 AACATCTCAACGAACTCAG-ACCCGGAGATTGAGAAGAACGGCACACCAGCTTCACCAGC 7899884 Query 11832 GATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACG 11891 ||| ||| || || || ||||| || ||||| || | |||| || || | || Sbjct 7899885 GATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCGGGAGGACCAATAAGCAGAACACCCTT 7899944 Query 11892 GGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 |||||| |||||| || | | | |||||||||||| || || ||||| Sbjct 7899945 CGGGATCCGAGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 7899998 >seq6 Length=38054609 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| ||||| || |||||||| | ||| || |||| | ||||||||||| ||| Sbjct 29820142 TGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCT 29820083 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || ||||| || |||||||| || ||||| || Sbjct 29820082 CGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAA 29820023 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 || || || | | | ||| || |||| |||| ||||| |||| | | ||||| Sbjct 29820022 GCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGATCCGTCGATCCACGTCATGGCCCAT 29819963 Query 119688 TTGGCCTT 119695 | |||||| Sbjct 29819962 TGGGCCTT 29819955 >seq16 Length=18736220 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/165 (74%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATGAGTCCTCTTT 119571 ||||| || |||||||| | ||| || |||| |||| ||||||||||| |||| || Sbjct 7908958 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAA--CCAGGCATGAGCCCTCGTT 7908901 Query 119572 TCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGA 119631 |||| ||| | ||||| | ||| || || || || |||||||| | || || ||||||| Sbjct 7908900 TCTTGAGCAAGAAGATCGTACAGAAGCTGCCGGAGAAGAAGATCCTTTCGACGCAGGCGA 7908841 Query 119632 AAGCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCAC 119675 | |||| | | ||| || |||||| |||| ||||| |||| Sbjct 7908840 AGGCGACGATTCTCTCCGC-GAAGGTCTGAGATCCGTCGATCCAC 7908797 >seq47 Length=709205 Score = 82.4 bits (90), Expect = 9e-11 Identities = 295/454 (65%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | | | |||| |||||||| || | | || || || Sbjct 641018 CGGTCAAACCGTCCTGGCCTCAACAAAGCAGAGTCAAGAATGTCTGCTCTATTGGTTGCA 641077 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || || ||||| || Sbjct 641078 GCAACAACGATGATACCAGTGTTACCTTCAAACCCATCCATCTCAGTTAGCAGCTGATTC 641137 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | ||||| || | ||||| || | | |||| | | | | ||| | |||| Sbjct 641138 AAAGTCTGCTCTCTTTCATCATT--ACCTCC-ACCAATTCCTGTTCCTCTTTGCCTACCA 641194 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| ||||||||||| | || || || || || ||| | |||| | |||| Sbjct 641195 ACAGCATCAATCTCATCTACAAAGACAATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA 641254 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || ||||| || | | || |||||||| || ||||||||||| || | | | | | Sbjct 641255 AGATCACGGACCCTCGAGGCACCAACACCGACAAACATCTCAACAAACTCAG-ATCCGGA 641313 Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | || | ||| || ||| || ||||| || || ||| || | || ||||| || Sbjct 641314 GATGGAGAAGAAAGGCACACCAGCTTCACCGGCAATAGCTTTCGCCAAAAGCGTCTTCCC 641373 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 |||||||| | |||| || || | || |||||| ||||||| || | | Sbjct 641374 AGTACCAGGAGGACCAATAAGCAGAACACCTTTCGGGATCCGGGCACCAACCGCAGTGAA 641433 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | |||||||||||| || || ||||| | |||| Sbjct 641434 CCTCTCAGGCTTCTTCAGAAACTCCACCACCTCC 641467 >seq4 Length=33175494 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||| || Sbjct 17034633 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCTGTA 17034692 Query 136777 GGGAACAGCTTTT 136789 | |||||||| Sbjct 17034693 TAGGCCAGCTTTT 17034705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588904247998800