Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq14 156 5e-33 seq9 152 6e-32 seq8 104 3e-17 seq18 91.5 2e-13 seq12 84.2 3e-11 >seq14 Length=28343526 Score = 156 bits (172), Expect = 5e-33 Identities = 199/274 (73%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 169742 AGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 169801 |||||||||| | | | | || || ||||||||||| ||||||||| || | | Sbjct 20845012 AGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAGATC 20845071 Query 169802 CAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTG 169861 | || | |||| | | ||| ||||| | | |||| ||| ||| || || |||| Sbjct 20845072 CTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTTCTG 20845131 Query 169862 ATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGC 169921 || ||||||| ||||| ||||| |||||||||||||||||| | || |||||| | |||| Sbjct 20845132 ATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTGAGC 20845191 Query 169922 ATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTT 169981 | |||||||| ||||| || || |||||| ||| ||||| || | ||||| || ||| Sbjct 20845192 ACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTC 20845251 Query 169982 TATTCTCAGCAATGCATGGTTCACTTGTTACTTC 170015 | || || |||||| |||| || || | ||| Sbjct 20845252 TTTTTAGTGCTATGCATAGTTCCCTGGTAATTTC 20845285 >seq9 Length=62778564 Score = 152 bits (168), Expect = 6e-32 Identities = 406/617 (66%), Gaps = 24/617 (4%) Strand=Plus/Minus Query 170953 TCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCG 171012 ||||||| || |||||||||||||| ||||||||| | || || ||||| | Sbjct 56234905 TCTTTCTAATTTATCCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAG 56234846 Query 171013 CAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCAT 171072 | || || ||||| | ||| | || | ||||| || || || || ||||| ||| Sbjct 56234845 CGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCAT 56234786 Query 171073 TTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTG 171132 |||| ||||||| |||| || |||| || | || | ||||| || ||| |||||| Sbjct 56234785 TTCATTTGATGGGAATTGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTG 56234726 Query 171133 CAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAA 171192 | || || |||| | ||| | | ||| | || |||| | || | || Sbjct 56234725 CTACTGT--AGAA-ATATTTTTT--------ATCTGAAAATGGTGATGGTGCAAATAAA- 56234678 Query 171193 GCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAG 171252 || |||| ||| | || | || | ||||||||||| ||| | || | Sbjct 56234677 --------TTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAATGGTCACCG 56234626 Query 171253 CAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACT 171312 | ||| | || ||||||| || ||||| |||||| || || ||| | ||||| | Sbjct 56234625 CTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTGGTTACAAT 56234566 Query 171313 TCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTC 171372 || ||||||| || || || || | ||| | ||| || | | || ||||||| Sbjct 56234565 TCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAATAGTAGGTC 56234506 Query 171373 TAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACC 171432 |||| | ||||| | || || | || | || ||||| || | ||||| ||||| | Sbjct 56234505 TAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGCGGAAGATC 56234446 Query 171433 CAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGA 171492 | || || || |||||||| ||||| ||||| ||| | || |||||||| | | |||| Sbjct 56234445 CGGACTT-GAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCACTTGGA 56234387 Query 171493 TGTC--ATCA-GTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAA 171549 || | ||| | | | || || ||||| ||| | ||||| | || || || |||||| Sbjct 56234386 TGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGTTTTACCAC 56234327 Query 171550 GAGGTAACGCACTTTAA 171566 | || | | | |||||| Sbjct 56234326 GTGGAAGCACTCTTTAA 56234310 >seq8 Length=29345952 Score = 104 bits (114), Expect = 3e-17 Identities = 129/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 169865 GTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATA 169924 ||||||| |||| ||||| |||||||||||||||||| | || ||||| || ||||| | Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 169925 ACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTAT 169984 ||||||| ||||| | |||| ||| ||| ||||| || | ||||| || || ||| Sbjct 6844732 ACATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 169985 TCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACA 170037 | || |||||| |||| ||| ||||| | |||||| ||||| ||| Sbjct 6844790 TTAGTGCTATGCATAGTTC-TTTGGAACTTCTAGTTGAATCAGGGAAACCACA 6844841 >seq18 Length=77673080 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || || || || |||| ||||||||| Sbjct 3654925 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 3654984 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 3654985 CTATTGCTCTTTCCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTT 3655044 Query 170649 GTTACATCATGGTATACACATGG 170671 || || |||| |||||| ||||| Sbjct 3655045 GTAACTTCATCGTATACTCATGG 3655067 >seq12 Length=60369500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 169819 GCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGT 169878 ||||| ||||| | |||||| ||||||| | || |||||||||||||| ||||| Sbjct 27415781 GCTGTTTTCTTGATCTACCCAATTGGTCAAAGAAGTTTTTCTGATGGTATGCCTCTAGGA 27415722 Query 169879 ATCTCAGGTACTTTCAACTTTATG 169902 ||||| |||||||||||||||||| Sbjct 27415721 ATCTCTGGTACTTTCAACTTTATG 27415698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579142237400640