Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq9 190 2e-43 seq14 147 3e-30 seq60 104 3e-17 seq3071 91.5 2e-13 seq8 91.5 2e-13 seq18 82.4 9e-11 >seq9 Length=62778564 Score = 190 bits (210), Expect = 2e-43 Identities = 409/607 (67%), Gaps = 7/607 (1%) Strand=Plus/Minus Query 169698 CATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGT 169757 ||||||||||||| |||||||| ||||| |||||||| || || ||||| || || | Sbjct 56234938 CATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCCACTAGGTCAAT 56234879 Query 169758 CCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCC 169817 | |||||||||| || ||||| ||| | || || || | ||| | | || Sbjct 56234878 CTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTT 56234819 Query 169818 TGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCT 169877 | ||||| || || || ||| | ||||| |||| || ||||||| | || || | Sbjct 56234818 TCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAATTGCCGGTGTAC 56234759 Query 169878 TGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTA--TGA 169935 | |||| || || | | ||||| |||||| ||| ||||| || | || || ||| Sbjct 56234758 TTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATATTTTTTATCTGA 56234700 Query 169936 AGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTA 169995 | | ||||| ||||||| || || ||| | | | || | ||||| ||||| Sbjct 56234699 AAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTA 56234640 Query 169996 TTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAA 170055 ||| |||||||| || |||||||| ||||| | ||||| || ||| ||||| || || Sbjct 56234639 TTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAA 56234580 Query 170056 GCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTAT 170115 | |||| | || || || ||||| ||||| || || | ||| | ||| || | Sbjct 56234579 ACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCT 56234520 Query 170116 TGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAG 170175 || || | || || ||| | || || |||| || | ||| | || || || | Sbjct 56234519 TGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTG 56234460 Query 170176 AGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGG 170235 ||||| |||||||| | | |||| || ||||| || ||||| || || || || ||||| Sbjct 56234459 TGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGG 56234401 Query 170236 ACTTCGTGCATGGTTGGCACCT---GCTGATCAACCACATGAAAACTTCATCTTCCCAGA 170292 |||| | ||| |||| || | | | || || ||||||||| | || ||| | || Sbjct 56234400 TATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGA 56234341 Query 170293 AGAAGTT 170299 || ||| Sbjct 56234340 GGAGGTT 56234334 >seq14 Length=28343526 Score = 147 bits (162), Expect = 3e-30 Identities = 188/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 168200 GTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTG 168259 |||| ||||||||| | || | ||||| ||||| ||||| ||||||||| || | Sbjct 20845009 GTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAG 20845068 Query 168260 CACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCT 168319 || || || | || | || || ||| | | | || | | |||||| ||||| | Sbjct 20845069 ATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTT 20845128 Query 168320 CTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTG 168379 ||||| ||||| || |||||||| || || ||||||| ||| | || |||||| ||| Sbjct 20845129 CTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTG 20845188 Query 168380 AGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCA 168439 ||||||| ||||| ||||| || || || ||| | || || ||||| ||||| || ||| Sbjct 20845189 AGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 20845248 Query 168440 GTTTGTTTAGTGCTATGCA 168458 | | |||||||||||||| Sbjct 20845249 CTCTTTTTAGTGCTATGCA 20845267 >seq60 Length=523306 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 169538 CTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGG 169597 || |||| ||| ||||||||||| ||||| ||| ||||||||| | || ||| | ||| Sbjct 21525 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 21584 Query 169598 AACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAA 169657 ||||| || || || |||| || |||| || ||||| ||| | | |||||| Sbjct 21585 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 21644 Query 169658 TTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCT 169717 | || || | || | || ||||||||||| ||||||||| ||||| |||| | Sbjct 21645 CTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGAT 21704 Query 169718 GTATTTGTCAGTGTCTTTCTTATCTACCCACT 169749 || ||||| |||||||| || || || || Sbjct 21705 GTTTTTGTTTCCGTCTTTCTAATTTATCCTCT 21736 >seq3071 Length=6037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGA 168812 || ||||| ||| || | ||||| ||| || ||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 >seq8 Length=29345952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/131 (77%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 168328 ATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAAT 168387 ||||| || | |||||| || || ||||||| ||| | || ||||| ||||||||||| Sbjct 6844675 ATGCCTCTAG-AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 168388 ATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTT 168447 ||||| ||||| || || || ||| | || || ||||| ||||| || ||| | ||| Sbjct 6844734 ATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 168448 AGTGCTATGCA 168458 ||||||||||| Sbjct 6844792 AGTGCTATGCA 6844802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| || || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGA 168812 || ||||| ||| || | ||||| ||| || ||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq18 Length=77673080 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | |||||||| || || | |||||||||||| Sbjct 3654925 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 3654984 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| | || | || || ||| |||| |||||| | ||| Sbjct 3654985 CTATTGCTCTTTCCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTT 3655044 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGG 169473 || ||||| | ||| || || ||| | || |||| || |||||||| Sbjct 3655045 GTAACTTCATCGTATACTCATGGATTGGCTAGTTCC---TATTTAGAAGG 3655091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574403614753680