Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq9 279 6e-70 seq14 178 1e-39 seq60 116 4e-21 seq8 98.7 1e-15 >seq9 Length=62778564 Score = 279 bits (308), Expect = 6e-70 Identities = 435/618 (70%), Gaps = 7/618 (1%) Strand=Plus/Minus Query 165574 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 165633 |||| | || | ||||||||||| || |||||||||||| |||||||| || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 165634 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTT 165693 || |||||||| |||||| || | || ||| || || || || || || | || Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 165694 CCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGT 165753 | | ||||| | ||||| || ||||| ||| | ||||| | |||||| ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 165754 TGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATAC 165813 ||| ||| | || || | || || | | || || |||||| ||| ||||| |||| Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 165814 TCTGTATC--AAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAG 165871 | | |||| || ||||||| | |||||||| || || ||| || | | ||||| Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 165872 GAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCG 165931 |||||||| || |||||||| || || ||||| || ||||| | ||||| || ||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 165932 TTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 165991 ||| ||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 165992 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCC 166051 | ||| | | | || | ||||| ||| | ||||| |||| |||| ||| | ||| Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 166052 CAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTC 166111 ||||| || | ||||| ||||| || || ||||||| ||||| || ||||| ||||| Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 166112 TTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGAT---CAACCGCATGAGAACTTT 166168 || || |||||| |||| ||||| |||| | ||| || || ||||| ||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 166169 GTCTTCCCTGAAGAAGTT 166186 | ||| |||| || ||| Sbjct 56234351 ATATTCACTGAGGAGGTT 56234334 Score = 132 bits (146), Expect = 5e-26 Identities = 258/367 (70%), Gaps = 13/367 (4%) Strand=Plus/Plus Query 163824 GTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAACCATCTGTTTCAT 163882 ||||| ||||| || ||| ||||||||||||| | ||| | || || | ||| || Sbjct 10190664 GTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTACTTCCGTTTTTAT 10190723 Query 163883 CGTCGCCTTCGTCGCTGCTCCCCCT-GTGGACATCGATGGTATTCGTGAACCTGTTGCAG 163941 | | ||| | |||||| || || || || || || ||||| ||||||||||| Sbjct 10190724 --TAGA-TTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTTTTCT 10190779 Query 163942 GTTCGCTCATGTATGGT--AACAACATCATCTCTGGTGCAGTTGTTCCCTCGTC-CAATG 163998 | || || | || ||| ||||| || | || |||||| | ||| ||| || | Sbjct 10190780 GGTCTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCATTATTTCTACTGTCTCAGGG 10190839 Query 163999 CAAT-TGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAA-TGGCTTTA 164056 | || |||| | || || ||| |||| ||| |||| |||||| |||||||| ||||| || Sbjct 10190840 CTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTATA 10190898 Query 164057 CAACGGTGGTC-CTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACA 164115 ||| ||||| ||| |||| | || | ||||| | | ||| | | || | Sbjct 10190899 CAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATA 10190958 Query 164116 TGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTT 164175 ||||||||||||||||||| || |||||| |||||||||||||||||| |||||| | Sbjct 10190959 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT 10191018 Query 164176 ACTCTGC 164182 | || || Sbjct 10191019 ATTCAGC 10191025 >seq14 Length=28343526 Score = 178 bits (196), Expect = 1e-39 Identities = 212/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171 || |||| | ||||||||||||| || | |||| ||||| |||||||||||| |||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 164172 GCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 164231 || || || | || |||||| | || | || ||| || ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 164232 GGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTG 164291 || || ||||| ||||| || || |||||||| || ||||||| ||| | || Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 164292 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 164351 |||||| | ||||||||||| || |||||||| || || ||| | || || ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 164352 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCT 164399 || ||||| ||||| || ||||| ||||| |||| ||||| | |||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTCT 20845286 >seq60 Length=523306 Score = 116 bits (128), Expect = 4e-21 Identities = 182/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 165382 AGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGC 165441 || ||||||||| || | | | | |||||| | || || |||| |||||| || Sbjct 21482 AGCTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGC 21541 Query 165442 TCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 165501 ||||| ||||| | ||| ||||| || || | ||||||||||| || ||||| Sbjct 21542 ACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCA 21601 Query 165502 CGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCG 165560 | | |||||| | |||| ||||| ||| | | | | |||||| | || || ||| || Sbjct 21602 CTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCA 21661 Query 165561 GTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 165620 | | || || || ||||| |||| |||| ||||| || | |||||||||| ||||| Sbjct 21662 AT-TGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCT 21720 Query 165621 TTCTCATCTACCCTCTGG 165638 |||| || || ||||||| Sbjct 21721 TTCTAATTTATCCTCTGG 21738 >seq8 Length=29345952 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 164262 ATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCAC 164321 |||||||| || ||||||| ||| | || ||||| || ||||||||||| || |||||| Sbjct 6844686 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 6844745 Query 164322 CCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164381 | ||| ||| | || || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 6844746 CATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 6844803 Query 164382 GGTTCTCTGGTTACTTCT 164399 ||||| ||| |||||| Sbjct 6844804 AGTTCTTTGG-AACTTCT 6844820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856952636240