Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq14 168 8e-37 seq8 123 3e-23 >seq14 Length=28343526 Score = 168 bits (186), Expect = 8e-37 Identities = 207/283 (73%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 168818 TACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 168877 || |||| | | |||||||| | | | | || ||||| | |||||||| |||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 168878 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG 168937 || ||||||| || || | | || ||| || ||| | | | |||| ||| ||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 168938 GGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTA 168997 || ||| |||||| |||||||||||||||| ||||| || |||||||| ||| | ||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 168998 TTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATG 169057 |||||| | |||||||||||||||||||| || || || ||| ||| ||||| ||| | Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 169058 TTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAA 169100 ||||| || ||||| || || |||||| |||| || |||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAA 20845281 >seq8 Length=29345952 Score = 123 bits (136), Expect = 3e-23 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 168954 GTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACA 169013 |||||||||||| ||| ||||| || |||||||| ||| | |||||||| || ||||||| Sbjct 6844673 GTATGCCTCTAG-AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 169014 ACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTAT 169073 ||||||||||||| || || || ||| ||| ||||| ||| | ||||| || || |||| Sbjct 6844732 ACATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 169074 TCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAG 169133 | || |||||| |||| ||| ||| ||| | |||||| || || || | || | Sbjct 6844790 TTAGTGCTATGCATAGTTC-TTTGGAACTTCTAGTTGAATCAGGGAAACCACAAAAGATG 6844848 Query 169134 AATC 169137 |||| Sbjct 6844849 AATC 6844852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564372836902080