Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-27 seq14 131 2e-25 seq18 98.7 1e-15 seq8 93.3 5e-14 seq12 89.7 6e-13 seq4 84.2 3e-11 seq1 84.2 3e-11 seq3071 82.4 9e-11 >seq9 Length=62778564 Score = 138 bits (152), Expect = 1e-27 Identities = 402/617 (65%), Gaps = 24/617 (4%) Strand=Plus/Minus Query 173375 TCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCG 173434 ||||| |||| || |||||||| || ||||||||| | ||| || ||||| | Sbjct 56234905 TCTTTCTAATTTATCCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAG 56234846 Query 173435 CAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCAT 173494 | || || ||||| | ||| | || | ||||| || || || || ||||| ||| Sbjct 56234845 CGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCAT 56234786 Query 173495 TTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTG 173554 |||| ||||||| |||| || |||| || | || | |||| || ||| |||||| Sbjct 56234785 TTCATTTGATGGGAATTGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTG 56234726 Query 173555 CAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATTCAAT 173614 | || || |||| | ||| | | ||| || || ||| ||| | | ||| Sbjct 56234725 CTACTGT--AGAA-ATATTTTTT--------ATCTGAAAATGGTGATGGTGCAAATAAAT 56234677 Query 173615 CCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAG 173674 | | || ||| | || | || | |||||||||||| ||| | || | Sbjct 56234676 ---------TATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAATGGTCACCG 56234626 Query 173675 CGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACT 173734 | ||| | || ||||||| || ||||| || ||||| || ||| | ||||| | Sbjct 56234625 CTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTGGTTACAAT 56234566 Query 173735 TCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTC 173794 || | ||||| || ||||| || | ||| | ||| | | | || ||||||| Sbjct 56234565 TCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAATAGTAGGTC 56234506 Query 173795 TTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATC 173854 | || | ||||| | || || | ||| | || ||||| || | ||||| ||||||| Sbjct 56234505 TAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGCGGAAGATC 56234446 Query 173855 CAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGA 173914 | || || || |||||||| ||||| ||||| ||| | || |||||||| | | |||| Sbjct 56234445 CGGACTT-GAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCACTTGGA 56234387 Query 173915 TGTCATCTGTAGAT---CAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAA 173971 || | || ||| || || ||||| ||| | |||| | || || || |||||| Sbjct 56234386 TGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGTTTTACCAC 56234327 Query 173972 GAGGTAACGCACTTTAA 173988 | || | | | |||||| Sbjct 56234326 GTGGAAGCACTCTTTAA 56234310 >seq14 Length=28343526 Score = 131 bits (144), Expect = 2e-25 Identities = 186/262 (71%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 172160 AGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCAC 172219 |||||||||| | | | | ||||| | || ||||| ||| |||||||||| | Sbjct 20845012 AGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAGATC 20845071 Query 172220 CTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 172279 |||| || | || ||| ||| ||| | | | ||| | | ||| || || |||| Sbjct 20845072 CTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTTCTG 20845131 Query 172280 ATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGC 172339 || ||||||| ||||| ||||| ||||| |||||||||||| | || |||||| | |||| Sbjct 20845132 ATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTGAGC 20845191 Query 172340 ATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTT 172399 | |||||||| ||||| || || |||||| ||| ||||| || | || || || ||| Sbjct 20845192 ACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTC 20845251 Query 172400 TATTCTCAGCAATGCACGGTTC 172421 | || || ||||| |||| Sbjct 20845252 TTTTTAGTGCTATGCATAGTTC 20845273 >seq18 Length=77673080 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 3654925 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 3654984 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 3654985 CTATTGCTCTTTCCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTT 3655044 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGG 173117 || || |||| |||||| ||||| | || ||| ||| | ||||| Sbjct 3655045 GTAACTTCATCGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGG 3655091 >seq8 Length=29345952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 172283 GTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATA 172342 ||||||| |||| ||||| ||||| |||||||||||| | || ||||| || ||||| | Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 172343 ACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTAT 172402 ||||||| ||||| | |||| ||| ||| ||||| || | || || || || ||| Sbjct 6844732 ACATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 172403 TCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAG 172462 | || ||||| ||||||| | || ||| | |||||| || || || ||| | Sbjct 6844790 TTAGTGCTATGCATAGTTCTTT-GGAACTTCTAGTTGAATCAGGGAAACCACAAAAGATG 6844848 Query 172463 AATC 172466 |||| Sbjct 6844849 AATC 6844852 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 172657 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCT 172716 ||||| || |||||||| |||||||||||||| || ||| | | || || || | Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 172717 ACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGA 172769 || |||| ||| || ||||| | || ||||| ||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq12 Length=60369500 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 58511540 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 58511481 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 || ||||| | ||||| |||||||| || ||||| |||||||| Sbjct 58511480 TGGGCCTGGAATGGGTCCCATTGGTGTGAAGAAGCATCTAGCACCATTT 58511432 >seq4 Length=33175494 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 21857743 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 21857684 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 || ||||| | ||||| |||||||| || ||| | |||||||| Sbjct 21857683 TGGGCCTGGAATGGGTCCCATTGGTGTGAAGAAGCATTTAGCACCATTT 21857635 >seq1 Length=45320942 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 10306371 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 10306430 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 || ||||| | ||||| |||||||| || ||| | |||||||| Sbjct 10306431 TGGGCCTGGAATGGGTCCCATTGGTGTGAAGAAGCATTTAGCACCATTT 10306479 >seq3071 Length=6037 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 172657 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCT 172716 ||||| || |||||||| |||||||||||||| || ||| | | || || || | Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 172717 ACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGA 172769 || |||| ||| || ||||| | || ||||| ||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587979560662560