Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq9 223 4e-53 seq14 163 3e-35 seq8 111 2e-19 seq60 96.9 4e-15 seq390 84.2 2e-11 seq18 82.4 9e-11 >seq9 Length=62778564 Score = 223 bits (246), Expect = 4e-53 Identities = 381/550 (69%), Gaps = 2/550 (0%) Strand=Plus/Minus Query 164001 CAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCC 164060 |||| | || | ||||||||||| |||||||| || ||| |||||||| || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 164061 TCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATT 164120 || |||||||| ||||||||| | || |||||| || || || || || |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 164121 CCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGT 164180 | || | || | ||||| |||||||| ||| | |||| | || ||| |||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 164181 TGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAA-ATA 164239 ||| ||| |||| |||| || || ||| |||||| | || | || || |||| || Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 56234710 Query 164240 CATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAG 164299 || | |||| |||| || ||||| | || || ||| | | | || | | Sbjct 56234709 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 56234650 Query 164300 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGT 164359 |||| |||||||| |||||||| || |||||||| ||||| | ||||| || | ||| | Sbjct 56234649 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 56234590 Query 164360 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 164419 |||| || || | ||| | || || || ||||| ||||| || || | ||| || ||| Sbjct 56234589 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 56234530 Query 164420 CATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTC 164479 || ||| || | || || ||| | || || |||| || | || | | Sbjct 56234529 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 56234470 Query 164480 AAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTAT 164539 |||| ||| | ||||| |||||||| || || || ||||||||||| || || || | | Sbjct 56234469 AAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATTCTTT 56234411 Query 164540 TGAACGAAGG 164549 | |||||||| Sbjct 56234410 TAAACGAAGG 56234401 >seq14 Length=28343526 Score = 163 bits (180), Expect = 3e-35 Identities = 203/273 (74%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 162722 GTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCT 162780 |||| |||||||| || | |||| ||||| ||||| ||||| ||| || ||||| || Sbjct 20845009 GTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGAT-TGCTGTTGCATATTCA 20845067 Query 162781 GCACCTGTTGCAGCAGC-ATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTT 162839 | ||||||||| | || || || || ||| || ||| || | | |||||| ||| Sbjct 20845068 GATCCTGTTGCAACTGCTATTGGT-GTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTT 20845126 Query 162840 CTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGC 162899 ||||| ||||| | || ||| |||||| ||||||| ||| |||| |||||| | Sbjct 20845127 TTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAAC 20845186 Query 162900 AGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGG 162959 |||||||||||||| ||||| || || |||||||| ||||| || ||||| ||||| || Sbjct 20845187 TGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGG 20845246 Query 162960 TTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 162992 || || || ||||| ||||| |||| |||| Sbjct 20845247 CTCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq8 Length=29345952 Score = 111 bits (122), Expect = 2e-19 Identities = 101/125 (81%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 162867 TGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926 |||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||| || || Sbjct 6844691 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA-CCATT 6844749 Query 162927 CCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTC 162986 || ||||| ||||| || ||||| ||||| || || || || ||||| ||||| |||| Sbjct 6844750 TCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATAGTTC 6844808 Query 162987 TTTGG 162991 ||||| Sbjct 6844809 TTTGG 6844813 >seq60 Length=523306 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 163852 CTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGG 163911 || |||| |||||| || || || ||||| || ||| ||||| || || | ||| Sbjct 21525 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 21584 Query 163912 AATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAA 163971 |||||| || |||||| | || || | | || ||||| ||| | | |||||||| Sbjct 21585 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 21644 Query 163972 CTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGC 164030 |||||||| ||| || | | |||| || ||||| |||| |||| ||||| |||| Sbjct 21645 CTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGA 21703 Query 164031 TGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGG 164065 ||| || ||| |||||||| || || ||||||| Sbjct 21704 TGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 21738 >seq390 Length=101491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 164094 TTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGAC 164153 |||||| || || || || || ||||| || || | ||| | |||||||| ||||| Sbjct 2374 TTTTGGTGTAGCGGCTATATTTCGATTCATCCACTTTTTCCAACGGTTTCATAATTGGAC 2433 Query 164154 TTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCG 164197 |||||||| || |||||||||||||| |||||| |||| |||| Sbjct 2434 ATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCG 2477 >seq18 Length=77673080 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 3654925 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 3654984 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | | | || || ||| | || |||||||| || Sbjct 3654985 CTATTGCTCTTTCCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTT 3655044 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGT 163788 || || || | ||| || |||||| |||| | ||||||| | || ||| Sbjct 3655045 GTAACTTCATCGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGT 3655092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557516072329200