Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq9 271 9e-68 seq14 196 5e-45 seq60 138 1e-27 seq8 114 1e-20 seq390 84.2 2e-11 seq18 82.4 9e-11 >seq9 Length=62778564 Score = 271 bits (300), Expect = 9e-68 Identities = 433/617 (70%), Gaps = 7/617 (1%) Strand=Plus/Minus Query 168863 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 168922 |||| | || | ||||||||||| || |||||||||||| |||||||| || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 168923 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATT 168982 || |||||||| |||||| || | || ||| || || | || || || ||||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 168983 CCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGT 169042 | | ||||| | ||||| || ||||| ||| |||||||| |||||||| ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 169043 AGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATAC 169102 || ||| | | || | || || | | || ||| |||||| ||| ||||| |||| Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 169103 TCTGTATC--AAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAA 169160 | | |||| || ||||||| ||||||| || || ||| || | ||| | Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 169161 GAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCG 169220 || || || ||||||||||| || || ||||| || ||||| | |||||||| ||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 169221 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 169280 || ||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 169281 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCC 169340 | ||| | | | || | ||||| ||| | ||||| |||| |||| ||| ||||| Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 169341 CAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTC 169400 ||||| || | ||||| |||||||| || |||| || ||||| || || || || || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 169401 TTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGAT---CAACCTCATGAGAACTTT 169457 || ||||||||| |||| | ||| | || || ||| || |||||||| ||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 169458 GTGTTCCCTGAGGAAGT 169474 | ||| ||||||| || Sbjct 56234351 ATATTCACTGAGGAGGT 56234335 Score = 116 bits (128), Expect = 4e-21 Identities = 260/371 (70%), Gaps = 17/371 (5%) Strand=Plus/Plus Query 167127 GTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTG-CAGCAACCATCTGTTTCAT 167185 || || ||||| || ||| ||||||||||||| || ||| | || || || |||| | Sbjct 10190664 GTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTACT-TCCGTTT--T 10190720 Query 167186 CATCGCCTTCGTCGGTGCT-CCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTG-CT 167243 || ||| | | |||| |||| || || || || |||| | ||||| ||| || Sbjct 10190721 TATTAGATTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTTTTCT 10190779 Query 167244 GGTTCACTCATGTATGGT--AACAACATCATCTCTGGTGCAGTTGTTCCTTCT-TCTAAT 167300 ||| | || | || ||| ||||| || | || |||||| || || || || ||| | Sbjct 10190780 GGT-CTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCA-TTATTTCTACTGTCTCAG 10190837 Query 167301 G-CTAT-TGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAG-TGGTTG 167357 | |||| |||| | || || || |||||||| |||| ||| || | || || ||| | Sbjct 10190838 GGCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTA 10190896 Query 167358 TACAATGGTGGTC-CTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTA 167416 ||||| ||||| ||| |||| | ||| | ||||| | |||| | | || Sbjct 10190897 TACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTA 10190956 Query 167417 TATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGC 167476 ||||||||||||||||||||| || |||||| ||||||||||| ||||| |||||| Sbjct 10190957 TATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGC 10191016 Query 167477 ATACTCTGCTC 167487 ||| || |||| Sbjct 10191017 ATATTCAGCTC 10191027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 ||||||||||||||||||||||| || |||||| ||||||||||| ||||| |||| Sbjct 10184690 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 10184631 Query 167475 GCATACTCTGCTC 167487 ||||| || |||| Sbjct 10184630 GCATATTCAGCTC 10184618 >seq14 Length=28343526 Score = 196 bits (216), Expect = 5e-45 Identities = 212/281 (75%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 ||||||| | ||||||||||||| || | |||| ||||| ||||| ||||| |||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 167475 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 167534 ||||| || | ||| || || | || || ||| ||| | ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 167535 GGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTC 167594 || ||| ||||| |||||||| || ||||||||||| ||||||| ||| |||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 167595 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 167654 |||||| | ||||||||||| || |||||||| || || ||| | || || ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 167655 TTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 |||||||| ||||| || ||||| ||||| |||| ||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq60 Length=523306 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 168714 CTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGG 168773 || |||| |||||| |||||||| ||||| | ||||||||||| || || | ||| Sbjct 21525 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 21584 Query 168774 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAA 168833 |||||||| || |||||| | |||||| | |||| ||||| ||| | | | | |||||| Sbjct 21585 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 21644 Query 168834 CTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 168892 || || || ||| || | | || || || ||||| |||| |||| ||||| || | Sbjct 21645 CTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGA 21703 Query 168893 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGG 168927 |||||||||| ||||||||| || || ||||||| Sbjct 21704 TGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 21738 >seq8 Length=29345952 Score = 114 bits (126), Expect = 1e-20 Identities = 112/142 (79%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 167553 ATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 167612 |||||||| | ||||||||||| ||||||| ||| |||| ||||| || ||||||||| Sbjct 6844675 ATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 167613 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTC 167672 || || ||||||| ||| ||| | || || ||||| ||||||||||| || || || Sbjct 6844734 ATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 167673 AGTGCAATGCACGGTTCTCTGG 167694 ||||| ||||| ||||| ||| Sbjct 6844792 AGTGCTATGCATAGTTCTTTGG 6844813 >seq390 Length=101491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 168774 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAA 168833 |||||||| || ||||| || |||||||| |||| ||||| ||| | ||||| |||||| Sbjct 2249 GCTTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAA 2308 Query 168834 CTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 168892 || || || ||| || | | || || || ||||| || || ||||||||||| || || Sbjct 2309 CTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 >seq18 Length=77673080 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| || ||||||||||| ||||||||||| || | || ||| Sbjct 3654937 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 3654996 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | || | || |||||| | || || || | || || || | | Sbjct 3654997 CCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATCG 3655056 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG 168649 |||||||| || ||||| ||||||||| | || || Sbjct 3655057 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGG 3655091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560539703930400