Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq14 168 1e-36 seq8 123 4e-23 >seq14 Length=28343526 Score = 168 bits (186), Expect = 1e-36 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | | ||||| | |||||||| |||||| || || | | Sbjct 20845012 AGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAGATC 20845071 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 |||| | |||| ||| || ||| | | | ||| | | ||| || ||| |||| Sbjct 20845072 CTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTTCTG 20845131 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 || |||||| || ||||||||||| || ||||||| ||| |||| ||||| |||||| Sbjct 20845132 ATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTGAGC 20845191 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873 |||||||||| ||||||||||| |||||||||||||| |||||||| ||||| || || Sbjct 20845192 ACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTC 20845251 Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGT 215901 | || ||| ||||| |||| || || Sbjct 20845252 TTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq8 Length=29345952 Score = 123 bits (136), Expect = 4e-23 Identities = 133/171 (78%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 215758 TATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAA 215817 |||||| || | ||||||||| || ||||||| ||| |||| ||||||||||||||||| Sbjct 6844674 TATGCCTCTAG-AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 215818 CATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTT 215877 |||||| ||||| ||||| || ||||||||||| |||||||| ||||| || || | || Sbjct 6844733 CATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 215878 CTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAAC 215928 ||| ||||| |||| ||| || ||| | |||||| || || || Sbjct 6844791 TAGTGCTATGCATAGTTC-TTTGGAACTTCTAGTTGAATCAGGGAAACCAC 6844840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744990830434080