Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq9 259 6e-64 seq14 187 3e-42 seq8 138 1e-27 seq60 111 2e-19 seq3071 100 3e-16 >seq9 Length=62778564 Score = 259 bits (286), Expect = 6e-64 Identities = 450/647 (70%), Gaps = 13/647 (2%) Strand=Plus/Minus Query 183561 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCC 183620 |||| | || | ||||||||||| |||||||||||||| || || || || ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 183621 ACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT- 183679 ||| ||||| ||| |||||||||| |||||||| || ||||| || || ||| ||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 183680 --TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGG 183737 |||| || |||| ||||||| || || ||| | | || | || ||| ||||||| Sbjct 56234829 CATCCTCTTTTTCC--AAGGGTTT-CATAATTGGGCACTGAATTCATTTCATTTGATGGG 56234773 Query 183738 AGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAA 183797 | |||| ||| |||| || | || || | | ||||| |||||| || ||||| || Sbjct 56234772 AATTGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AA 56234714 Query 183798 TACATTGTA--TGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAA 183855 || || || |||| |||| || ||||| | ||| || ||| | | | |||| Sbjct 56234713 TATTTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAA 56234654 Query 183856 GAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTT 183915 | ||||| || ||||| ||||| || || || || || ||||||| |||||| |||| | Sbjct 56234653 GCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCT 56234594 Query 183916 GCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTT 183975 || ||| |||||| | |||||| || ||||||||||| ||||| || || | ||| | Sbjct 56234593 GCTTTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTA 56234534 Query 183976 TGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTA 184035 || | | || ||| || | || || ||| | || || |||| |||| || | Sbjct 56234533 AGGATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATT 56234474 Query 184036 AGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATA 184095 ||||| || | ||||| |||||||| | | |||| || ||||| || || || || Sbjct 56234473 TCCCAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATT 56234415 Query 184096 CTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGAT---CAACCACATGAGAAT 184152 ||| | || ||||| | || | ||| | || || ||| || || ||||| || Sbjct 56234414 CTTTTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAAC 56234355 Query 184153 TTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||||| | |||||||| ||||| | || | |||||| ||| Sbjct 56234354 ATTATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAATG 56234308 >seq14 Length=28343526 Score = 187 bits (206), Expect = 3e-42 Identities = 204/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 182131 GTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTG 182190 |||||||||||||| || | | | ||||| ||||| ||||| ||| ||||| || | Sbjct 20845009 GTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAG 20845068 Query 182191 CTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCT 182250 ||| || || | || || ||| ||||| ||| || | | |||||| || | Sbjct 20845069 ATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTT 20845128 Query 182251 CCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTG 182310 | ||| ||||| || |||||||| || || ||||||| |||| | || |||||| ||| Sbjct 20845129 CTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTG 20845188 Query 182311 AGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTT 182370 ||||||||||||||||||| || || |||||||| |||||||| ||||||||||| || | Sbjct 20845189 AGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 20845248 Query 182371 CACTGTTTAGTGCAATGCACGGTTCTTTGGT 182401 | || |||||||| ||||| |||| |||| Sbjct 20845249 CTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq8 Length=29345952 Score = 138 bits (152), Expect = 1e-27 Identities = 118/142 (83%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 182259 ATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAAC 182318 ||||| || | |||||| || || ||||||| |||| | || ||||| |||||||||||| Sbjct 6844675 ATGCCTCTAG-AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 182319 ATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTT 182378 ||||||||||| || || || ||||| |||||||| ||||||||||| || || || ||| Sbjct 6844734 ATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 182379 AGTGCAATGCACGGTTCTTTGG 182400 ||||| ||||| ||||||||| Sbjct 6844792 AGTGCTATGCATAGTTCTTTGG 6844813 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 182631 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAAC 182690 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| |||| Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 182691 ACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGA 182743 |||||||| ||| | | ||||||||| |||||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq60 Length=523306 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 183397 CATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAA 183456 |||||| | ||| ||| |||| |||||| | ||||| || ||| || ||||| ||| Sbjct 21510 CATTCTTTGATGTAACTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAA 21569 Query 183457 CTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATG 183516 || || || | ||| |||||| || |||||| |||| || | | || ||||| ||| Sbjct 21570 CTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATG 21629 Query 183517 CTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTC 183576 | | | |||||||||||||| | || | || ||||| ||||| |||| ||| Sbjct 21630 TTGCATTAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAGTTGCATTC 21689 Query 183577 TCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGG 183625 | ||||| |||| ||||||||| || || || || ||||| |||| Sbjct 21690 TTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 21738 >seq3071 Length=6037 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 182631 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAAC 182690 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| |||| Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 182691 ACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGA 182743 |||||||| ||| | | ||||||||| |||||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611621480134800