Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq9 286 4e-72 seq14 206 3e-48 seq60 111 2e-19 seq8 105 8e-18 seq12 96.9 4e-15 seq390 89.7 6e-13 >seq9 Length=62778564 Score = 286 bits (316), Expect = 4e-72 Identities = 451/642 (70%), Gaps = 7/642 (1%) Strand=Plus/Minus Query 166541 CAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCC 166600 |||| ||||| | || |||||||| |||||||| || ||| |||||||| || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 166601 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATT 166660 || |||||||| |||||| || | || ||| || || | || || || ||||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 166661 CCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGT 166720 | |||| || | ||||| || || || ||| ||||||| |||||||| ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 166721 AGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACAC 166780 || ||| | || || | || || | | || || |||||| ||| ||||| || | Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 166781 TCTGTATC--AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAG 166838 | | |||| || ||||||| ||||||| || || || || | | ||||| Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 166839 GAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCG 166898 |||||||| ||||||||||| || || ||||||| |||||| | ||||| || ||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 166899 TTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGG 166958 ||| ||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 166959 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCC 167018 | ||| | | | || | ||||| ||| | ||||| |||| |||| ||| ||||| Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 167019 CAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTC 167078 |||||| | | ||||| || ||||| || ||||||| |||||||| || || ||||| Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 167079 TTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGAT---CAACCTCATGAGAGTTTC 167135 || || || ||||| || |||||||||| || ||| || |||||||| | | Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 167136 GTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||| |||| |||||| | || | || | | |||| ||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAA 56234310 Score = 127 bits (140), Expect = 2e-24 Identities = 260/374 (70%), Gaps = 13/374 (3%) Strand=Plus/Plus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCG-CCGCTAC 164849 |||||| || || || ||||| |||||| | |||||||| || | | ||||||| Sbjct 10190652 AACCGTTTTACAGTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTAC 10190711 Query 164850 AATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCT-GTGGACATTGATGGTATTCGTG 164908 |||||||| |||||| |||||| || || || || ||||| ||||| ||| Sbjct 10190712 TTCCGTTTTTATTAG---ATTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTG 10190767 Query 164909 AACCTGTCGCAGGTTCTCTAATGTACGGT--AACAACATCATCTCTGGTGCTGTCGTTCC 164966 ||||||| | ||||| | || ||| ||||| || | || ||||| | ||| Sbjct 10190768 AACCTGTTTTCTGGTCTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCATTATTTCT 10190827 Query 164967 GTCTTCTAACG-CAATCGGACTT-CACTTCTATCCTATTTGGGAAGCTGCAACCATGGAT 165024 ||| | | | || | || || || || | || ||| |||||||| || | ||| Sbjct 10190828 ACTGTCTCAGGGCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGAT 10190886 Query 165025 GAA-TGGTTGTACAACGGTGGTC-CTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 ||| ||| | ||||| ||||| |||| | | |||| | ||||| | | |||| Sbjct 10190887 GAAATGGCTATACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTG 10190946 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 ||||||| || |||||||||||||||||||| || ||| || |||||||||||||||| Sbjct 10190947 TAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 10191006 Query 165143 TTTGCGTAGCATAT 165156 || || |||||| Sbjct 10191007 TTGCTGTTGCATAT 10191020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 165079 GGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCT 165138 ||||||||||| || |||||||||||||||||||| || ||| || |||||||||||| Sbjct 10184702 GGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCT 10184643 Query 165139 TGGATTTGCGTAGCATAT 165156 |||||| || |||||| Sbjct 10184642 TGGATTGCTGTTGCATAT 10184625 >seq14 Length=28343526 Score = 206 bits (228), Expect = 3e-48 Identities = 210/274 (77%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 165087 TTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTG 165146 ||| || |||| | ||||||||||||| || | | || ||||| |||||||||||| Sbjct 20844995 TTGTTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGC 20845054 Query 165147 CGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGG 165206 || |||||| | ||||| || ||||| | |||||| || ||| || | | Sbjct 20845055 TGTTGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGA 20845114 Query 165207 TCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTT 165266 |||||| ||||| |||||| |||||||||| || |||||||||||||| |||| |||| | Sbjct 20845115 TCAAGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGT 20845174 Query 165267 CGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGG 165326 || |||||| | || || |||||||||||||| || || |||||| | || || ||||| Sbjct 20845175 TGTATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 20845234 Query 165327 GGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 165360 |||||||| || |||||||| |||||||||| Sbjct 20845235 TGTATTCGGCGGCTCTCTTTTTAGTGCTATGCAT 20845268 >seq60 Length=523306 Score = 111 bits (122), Expect = 2e-19 Identities = 181/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 166349 AGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGC 166408 || ||||||||| || || | | | |||||| | | || |||| |||||| || Sbjct 21482 AGCTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGC 21541 Query 166409 TCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCA 166468 ||||| ||||| | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 21542 ACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCA 21601 Query 166469 CGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAG 166527 | ||||||| | |||| ||||| ||| | | | |||||| | ||||| ||| || Sbjct 21602 CTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCT-GTTC 21660 Query 166528 GTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCT 166587 | || || || |||||| | || || | ||||| |||| ||| || ||| |||| Sbjct 21661 AATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCT 21720 Query 166588 TTCTCATCTACCCTCTGG 166605 |||| || || ||||||| Sbjct 21721 TTCTAATTTATCCTCTGG 21738 >seq8 Length=29345952 Score = 105 bits (116), Expect = 8e-18 Identities = 106/134 (79%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 165227 GTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATA 165286 |||||||||| | |||||||||||||| |||| |||| | || ||||| || || || | Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 165287 ACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTT 165346 ||||||||||||| || || || ||| | || || ||||| |||||||| || || || | Sbjct 6844732 ACATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 165347 TCTCTGCTATGCAT 165360 | |||||||||| Sbjct 6844790 TTAGTGCTATGCAT 6844803 >seq12 Length=60369500 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 165169 GCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGT 165228 || |||||| | || |||||| || |||| || | |||||| | ||||| ||||||||| Sbjct 27415793 GCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAAGAAGTTTTTCTGATGGT 27415734 Query 165229 ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 165264 |||||||| || |||||||||||||| |||| |||| Sbjct 27415733 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 27415698 >seq390 Length=101491 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/125 (78%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 166452 GCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAA 166511 || |||||||||||||| |||||||| || |||| ||||| ||| | || || |||||| Sbjct 2249 GCTTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAA 2308 Query 166512 ATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGC 166570 | ||||| ||| || | || || || ||||||||||| || |||||||| ||||| Sbjct 2309 CTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 Query 166571 TGTCT 166575 |||| Sbjct 2368 -GTCT 2371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/125 (77%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 166452 GCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAA 166511 || |||||||||||||| |||||||| || |||| ||||| || | || || |||||| Sbjct 9886 GCTTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTTTGTTACGTCAATTTGAA 9945 Query 166512 ATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGC 166570 | ||||| ||| || | || || || ||||||||||| || |||||||| ||||| Sbjct 9946 CTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 10004 Query 166571 TGTCT 166575 |||| Sbjct 10005 -GTCT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563592132023040