Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq14 161 1e-34 seq8 105 8e-18 >seq14 Length=28343526 Score = 161 bits (178), Expect = 1e-34 Identities = 208/285 (73%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 || |||| | | |||||||||| | | || | ||||| ||||||||||| ||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| | ||| || || | || | | ||| ||||| | | || | | ||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 ||| ||| || || | ||||||||||| ||||| ||||| || ||||| ||| | ||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATG 170256 |||||| | |||||||||||||||||||||||||| || ||| ||| || |||||| | Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 170257 TTCGGAGGAGCACTCTTCTCA--GCAATGCACGGTTCACTTGTAA 170299 ||||| | || ||||| | | || ||||| |||| || |||| Sbjct 20845239 TTCGGCG--GCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAA 20845281 >seq8 Length=29345952 Score = 105 bits (116), Expect = 8e-18 Identities = 129/171 (75%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 170155 ATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAAC 170214 |||||||||| ||||| ||||| || ||||| ||| | |||||||| || ||||||||| Sbjct 6844675 ATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 170215 ATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTC 170274 ||||||||||| ||||| || ||| ||| || |||||| | ||||| || | || || Sbjct 6844734 ATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 170275 TCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACA 170325 || ||||| |||| ||| ||| ||| | |||||| || || ||| Sbjct 6844792 AGTGCTATGCATAGTTC-TTTGGAACTTCTAGTTGAATCAGGGAAACCACA 6844841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582776994542400