Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq14 167 3e-36 seq9 122 1e-22 seq8 113 5e-20 >seq14 Length=28343526 Score = 167 bits (184), Expect = 3e-36 Identities = 214/294 (73%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 84341 AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAAC 84400 |||| | || || |||| |||||| ||| || |||| || |||||||||||||| || Sbjct 20845286 AGAAATTACCAGGGAACTATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTAC 20845227 Query 84401 TCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTA 84460 || ||||||||||| || |||||||| ||||| || || | ||||| |||| ||| | Sbjct 20845226 ACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAA 20845167 Query 84461 GTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGG 84520 |||||| || || ||||| || || ||||| | |||||| ||| ||||| | | || Sbjct 20845166 GTTGAAAGTACCAGAGATTCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGG 20845107 Query 84521 ATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCA 84580 | | | ||| ||| || || | |||||| ||| | || || |||||| ||||| Sbjct 20845106 GCAGATCAAGAAAACACCAATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCA 20845047 Query 84581 TGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA 84634 ||||| ||||| |||| | ||||||||| |||| | |||| ||| |||| Sbjct 20845046 AGGACGTATACCCAGACAGAAACTAAGTTCCCACTCACAATCCATATAA-CAAA 20844994 >seq9 Length=62778564 Score = 122 bits (134), Expect = 1e-22 Identities = 259/370 (70%), Gaps = 15/370 (4%) Strand=Plus/Minus Query 84556 GAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATT 84615 |||| || || |||||| ||||| ||||||||||| ||||| | ||||||||| | Sbjct 10191027 GAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACT 10190968 Query 84616 CACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAG-GT 84674 |||||||||| ||| | | |||||| | ||||| | |||| |||| ||||| Sbjct 10190967 CACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGCAA 10190908 Query 84675 CCACCATTATATAGCCA-TTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAG 84733 |||| || |||||||| ||| || | ||| |||| ||| || | || ||||| | Sbjct 10190907 CCACGTTTGTATAGCCATTTCATCAACGGATGCAGCTT-CCAGATGGCGTAAAAATGCAA 10190849 Query 84734 ACCA-ATAG-CATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTT--CCGTACA 84789 |||| |||| | | ||| | ||| || ||||| ||| | || |||||| || || | Sbjct 10190848 ACCACATAGCCCTGAGACAGTAGAAATAATGCACCGGAACTAATATTGTTTCACCTTAAA 10190789 Query 84790 TGAGAGAACCAG-CGACTGGCTCACGGATACCGTCAATATCAACT-GGGGGTGCACCAAC 84847 |||| ||||| || || |||| |||| |||||||| ||| | || ||| ||| Sbjct 10190788 GAAGAG-ACCAGAAAACAGGTTCAC-AATACACTCAATATCTACTAGAGGAAGCAGCAAT 10190731 Query 84848 GAATGCAATGATGAAACAGACAGTGGCAG-CAAGTAGAGTTGGAATCATAAGAGTTCCAA 84906 |||| ||| | |||| || ||| || | ||| || || || ||||| | | |||| Sbjct 10190730 GAATCTAATAA--AAACGGA-AGTAGCGGTCAATTAAGGTAGGGATCATCAAAACACCAA 10190674 Query 84907 ACCAACCAAC 84916 |||| ||||| Sbjct 10190673 ACCATCCAAC 10190664 >seq8 Length=29345952 Score = 113 bits (124), Expect = 5e-20 Identities = 127/166 (77%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 ||| || ||| ||||| | |||| | |||||| ||| |||| |||||| ||| | Sbjct 6844848 CATCTTTTGTGGTTTCCCTGATTCAACTAGAAGTTCCAAA-GAACTATGCATAGCACTAA 6844790 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| | || |||||||||||||| || || ||||| ||||| || |||||||| |||| Sbjct 6844789 ATAGGGAGCCGCCGAATACACCAGCTACACCTAACAT-TGAAATGG-TGCATAAGAATGT 6844732 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGAT 84478 | || || |||||||| |||| ||| ||||||| || || ||||| Sbjct 6844731 TGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGAT 6844686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571204004593680