Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq159 109 6e-19 seq8 105 8e-18 seq6 102 9e-17 >seq159 Length=194462 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||||||| || | || ||||| |||||| |||||||| || || | || | Sbjct 113489 AGTTCCTGAATTGAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 113430 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| ||| ||||||| ||||| || || || || | ||| || | ||| | Sbjct 113429 GTAAGTTTGGATAGCAGAATCAATATCTTCTTTGTGGATGCCAACAGAGACCCTCATGAG 113370 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||||| ||| ||| | |||||| || |||||| | || | Sbjct 113369 CATGTGCTGAGGCCTTTCAACAACTTTCGCATTGACTTTCAAGAGGTATGATCTCTCAAG 113310 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 ||||| || ||||| |||| ||| ||| || Sbjct 113309 AGTTTTGAATCCAAAGTAGTCATATTCAAAATC 113277 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 113796 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 113737 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || |||||| || || ||| ||||||||| ||| | || || ||||||| Sbjct 113736 TTAGAAGCACCATTAGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGAA 113677 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||||||||| || || |||| || | |||||| ||| | |||||||| || Sbjct 113676 ACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATATC 113617 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 113616 CCCTCAATGCTATCATCCTTCAT 113594 >seq8 Length=29345952 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||||||| || | || ||||| |||||| |||||||| ||| || | || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || |||| || | ||||| ||||| || || || || | ||| || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 |||| |||||||| ||||| | ||| || | ||| || || |||||| | || | | Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 ||||| || ||||| |||| ||| ||| || ||||| ||| ||| Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGATT 19411476 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||||||| || | || |||||||||||| ||||||| || || | ||| | Sbjct 15956446 AGTTCCTGAATTGAAGAGAGTCGGAGATGCATGAGTAAACCACCGCTGAGACATCAAATG 15956387 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| || | ||||| || ||| || || || || | ||| || | ||| | Sbjct 15956386 GTAAGTTTTGATTGCGGAATCAATGTCCTCTTTGTGAATGCCGACAGAAACCCTCATGAG 15956327 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||| | ||| || | |||||| || ||||| | || | Sbjct 15956326 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGACCTCTCGAG 15956267 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 ||||| || ||||| |||| || ||| || ||||| ||| || Sbjct 15956266 AGTTTTGAACCCAAAGTAGTCATACTCAAAATCACGATCATAAATGAT 15956219 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | || | ||||||| || |||| | | |||||| | ||||||| Sbjct 19410922 CCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACCA 19410981 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| |||||||| | || | || || || |||| Sbjct 19410982 TTAGATGTTCCATTCGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGAA 19411041 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || |||| ||| | |||||| || | |||||||||||| Sbjct 19411042 ACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCCTTCAATGTATCATAAATT 19411101 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||| || |||| Sbjct 19411102 CCCTCAATGCTATCGTCCTTCAT 19411124 >seq6 Length=38054609 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||| | ||||||| || | || | | |||||| |||||||| Sbjct 36615722 ACCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 36615781 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| ||||| || || ||| ||||||||| |||| | || || || || Sbjct 36615782 ATTAGATTCTCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGA 36615841 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || ||| ||||| || || |||| ||| | |||||| ||| | ||||||||||| Sbjct 36615842 AACACCAATACCCCCAGCTGATTTACTTATAACCGCACACTCTTTCAATGTATCATAAAT 36615901 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 36615902 CCCCTCAATGCTATCATCCTTCAT 36615925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| || ||||| | || |||||||||||| | |||||| || || | || | Sbjct 36616049 AGTTCCAGAGTTAAAGAGAGTCGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 36616108 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || || | | | | ||||| |||||| || ||| || || | ||| || | ||| | Sbjct 36616109 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 36616168 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||| | ||| || | |||||| || |||||| | || | Sbjct 36616169 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 36616228 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 || || || || || |||| ||| |||||| Sbjct 36616229 AGTCTTGAATCCGAAGTAGTCATATTCAAAGTC 36616261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562040321095440