Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq14 141 3e-29 seq8 91.5 4e-14 >seq14 Length=28343526 Score = 141 bits (156), Expect = 3e-29 Identities = 185/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 |||||||||| || | | || || || | || ||||| |||||||||| ||| | Sbjct 20845012 AGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAGATC 20845071 Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261 | | | | ||| | | || ||||| | | || | | ||||| |||||| || Sbjct 20845072 CTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTTCTG 20845131 Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321 || | |||||||| || |||||||||||||| ||||||||| | ||||||||| | || | Sbjct 20845132 ATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTGAGC 20845191 Query 26322 ATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC 26381 | || || || ||||||||||| || ||| ||||| ||||| || ||||| || ||| Sbjct 20845192 ACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTC 20845251 Query 26382 TTTTCGCTGCTATGCA 26397 |||| ||||||||| Sbjct 20845252 TTTTTAGTGCTATGCA 20845267 >seq8 Length=29345952 Score = 91.5 bits (100), Expect = 4e-14 Identities = 101/131 (77%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 26267 ATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAAT 26326 |||||||| | |||||||||||||| ||||||||| | |||||||| || || || || Sbjct 6844675 ATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 26327 ATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTC 26386 || || ||||| ||||| || ||| ||||| ||||| || ||||| || | || || Sbjct 6844734 ATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 26387 GCTGCTATGCA 26397 ||||||||| Sbjct 6844792 AGTGCTATGCA 6844802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146709418803504