Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq14 170 6e-38 seq12 87.8 5e-13 >seq14 Length=28343526 Score = 170 bits (188), Expect = 6e-38 Identities = 190/254 (75%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 36360 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 36419 ||||||||| || | || || |||||||| || || ||||| | ||| || || || Sbjct 20845267 TGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGG 20845208 Query 36420 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 36479 |||||||| || ||||| || | || || |||| |||||| |||||||| || || || Sbjct 20845207 TGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 20845148 Query 36480 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 36539 || |||||||||| |||||| ||||| ||||| ||| ||| ||| ||||| ||| || Sbjct 20845147 CCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATCAAGAAAACACCA 20845088 Query 36540 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTA 36599 | || | ||||||||| ||||||| || ||| ||||| || | ||||| || | Sbjct 20845087 ATAGCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGTATACCCAGACAG 20845028 Query 36600 TAACTAAGTTCCCA 36613 ||||||||||||| Sbjct 20845027 AAACTAAGTTCCCA 20845014 >seq12 Length=60369500 Score = 87.8 bits (96), Expect = 5e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 36455 CATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 36514 |||||| |||||||| || || || || ||||||||||||||||| ||||| | ||| || Sbjct 27415698 CATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCTTTGACC 27415757 Query 36515 AAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGC 36550 || ||||||| ||||| |||||| || ||||| Sbjct 27415758 AATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGC 27415793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150436987348084