Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq14 158 4e-34 seq8 109 2e-19 >seq14 Length=28343526 Score = 158 bits (174), Expect = 4e-34 Identities = 190/256 (74%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 5581 ATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGG 5640 |||||||||| || | || || |||||||| ||||| ||||| | |||||| || || Sbjct 20845268 ATGCATAGCACTAAAAAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGG 20845209 Query 5641 ATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 |||||||| || ||||| || | |||||||| | ||||||||| |||||||||||||| Sbjct 20845208 GTGCATAAGAATGTTGTGCTCAGTTTGGAATACAACCATAAAGTTGAAAGTACCAGAGAT 20845149 Query 5701 ACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATAC-TG 5759 || |||||||||| |||| |||||||| || | | ||| | | || || || Sbjct 20845148 TCCTAGAGGCATACTATCAGAAAAACTTCCTTGATCAATTGGGCAGATCAAGAAAACACC 20845089 Query 5760 AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATC 5819 | || || | ||||| || |||||||||| || |||||| || || || || | | Sbjct 20845088 AATA-GCAGTTGCAACAGGATCTGAATATGCAACAGCAATCCAAGGACGTATACCCAGAC 20845030 Query 5820 TGTAACTAAGTTCCCA 5835 | ||||||||||||| Sbjct 20845029 AGAAACTAAGTTCCCA 20845014 >seq8 Length=29345952 Score = 109 bits (120), Expect = 2e-19 Identities = 107/134 (80%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 5581 ATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGG 5640 |||||||||| || | | || |||||||| ||||| ||||| | ||| || || || Sbjct 6844803 ATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACAT-TGAAATGG 6844745 Query 5641 ATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 |||||||| || ||||| || ||||||||||| | ||||||||| |||||||||||||| Sbjct 6844744 -TGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGAT 6844686 Query 5701 ACCAAGAGGCATAC 5714 | |||||||||| Sbjct 6844685 -TCTAGAGGCATAC 6844673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152631933289356