Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq18 116 3e-21 seq1 105 5e-18 seq3 100 2e-16 seq133 89.7 4e-13 >seq18 Length=77673080 Score = 116 bits (128), Expect = 3e-21 Identities = 213/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 |||||||| | || |||||||| || || | | |||| ||| || || || | || Sbjct 7477130 CACGTGATTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACAAG 7477189 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 || || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 7477190 ATCGCACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 7477249 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 ||||| ||||| ||| | || | ||| || | |||||||||||||| ||||| ||| Sbjct 7477250 ACCGAGGCCCATATCCGCTGAACGCTGATACATTTGACACGAGAGCTCCCCGTCCACCAC 7477309 Query 29991 GTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTT 30050 ||| ||||| | ||||||| |||||||| ||||| | | || || || Sbjct 7477310 GTAGAACTGTGCGAACATGTGGCATGGAGGAAGCGCCATCAACTTGAGATCAGAAGGATT 7477369 Query 30051 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 30110 ||| || | | ||||| || | || || || |||||| |||| ||| | ||| Sbjct 7477370 CCAAGCCGATAATATGATACGACGATCATCAGGATTGTTCTTGATCTTGTCGATTACGTC 7477429 Query 30111 TTGCAGCTGATC 30122 | | |||||||| Sbjct 7477430 TAGGAGCTGATC 7477441 >seq1 Length=45320942 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||||||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 9628181 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAAAGGTACACCAAG 9628122 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT-CGCTCACGTAAA 29995 ||||| || | || | ||| || | |||||||| |||||||| | ||| ||||||| Sbjct 9628121 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 9628063 Query 29996 ACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGG 30055 ||||| | ||||||| |||||||| ||||| || | ||| || ||||| | Sbjct 9628062 ACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAG 9628003 Query 30056 CGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 | ||| || || |||| || || || |||||| |||| Sbjct 9628002 CAGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 9627963 Score = 96.9 bits (106), Expect = 3e-15 Identities = 195/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 ||||||| | || || ||||| || || | | |||||||| || || || | || Sbjct 31775337 CACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 31775396 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 31775397 ATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 31775456 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 || || | ||| ||| | || | ||| || | ||| || |||||||| || || ||| Sbjct 31775457 ACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCAC 31775516 Query 29991 GTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047 || ||||| | ||||| ||||||||||| || ||||| || | ||| || Sbjct 31775517 ATAGAACTGCGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGG 31775573 Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 |||||| || | | |||| |||| || || || |||||| |||| Sbjct 31775574 GTTCCAAGCAGATAATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31775621 >seq3 Length=43957692 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 40985358 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 40985417 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 40985418 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 40985477 Query 29997 CTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30053 ||| | ||| ||||||| |||||||| ||||| || | ||| || ||||| Sbjct 40985478 CTGTGCAAACA---TGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 40985534 Query 30054 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 || ||| || || || | || || || |||||| |||| Sbjct 40985535 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 40985576 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 41004336 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 41004395 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 41004396 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 41004455 Query 29997 CTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30053 ||| | ||| ||||||| |||||||| ||||| || | ||| || ||||| Sbjct 41004456 CTGTGCAAACA---TGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 41004512 Query 30054 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 || ||| || || || | || || || |||||| |||| Sbjct 41004513 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 41004554 Score = 96.9 bits (106), Expect = 3e-15 Identities = 195/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 ||||||| | || || ||||| || || | | |||||||| || || || | || Sbjct 31765897 CACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 31765838 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 31765837 ATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 31765778 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 || || | ||| ||| | || | ||| || | ||| || |||||||| || || ||| Sbjct 31765777 ACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCAC 31765718 Query 29991 GTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047 || ||||| | ||||| ||||||||||| || ||||| || | ||| || Sbjct 31765717 ATAGAACTGCGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGG 31765661 Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 |||||| || | | |||| |||| || || || |||||| |||| Sbjct 31765660 GTTCCAAGCAGATAATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31765613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 195/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 ||||||| | || || ||||| || || | | |||||||| || || || | || Sbjct 31809844 CACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 31809903 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 31809904 ATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 31809963 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 || || | ||| ||| | || | ||| || | ||| || |||||||| || || ||| Sbjct 31809964 ACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCAC 31810023 Query 29991 GTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047 || ||||| | ||||| ||||||||||| || ||||| || | ||| || Sbjct 31810024 ATAGAACTGCGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGG 31810080 Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 |||||| || | | |||| |||| || || || |||||| |||| Sbjct 31810081 GTTCCAAGCAGATAATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31810128 >seq133 Length=227095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | || | || || || ||||| ||| |||||||| ||||| || || Sbjct 171952 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 171893 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||| || |||||||| | | |||||||| Sbjct 171892 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 171833 Query 29997 CTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30056 |||| | ||||||| |||||||| ||||| || | ||| || ||||| || Sbjct 171832 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 171773 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 ||| || || || | || || || |||||| |||| Sbjct 171772 CGACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 171734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408569064656858