Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq14 172 6e-38 seq8 116 4e-21 >seq14 Length=28343526 Score = 172 bits (190), Expect = 6e-38 Identities = 205/278 (74%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || ||||||||||| || | | | ||||| ||||||||||| ||||||||| || | Sbjct 20845009 GTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTTGCATATTCAG 20845068 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 || || | | || | | ||| |||||| ||| || | | |||||| ||| | Sbjct 20845069 ATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAAGGAAGTTTTT 20845128 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| |||||||| || || ||||||||||| |||| ||| | || |||||| | | Sbjct 20845129 CTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAAACTG 20845188 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 |||||||||| || |||||||| || || ||| | || || || ||||||||||| || | Sbjct 20845189 AGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 20845248 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCT 163113 | || |||||||||||||| |||| || || | |||| Sbjct 20845249 CTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTCT 20845286 >seq8 Length=29345952 Score = 116 bits (128), Expect = 4e-21 Identities = 130/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||||| | || ||||||||||| |||| ||| | || ||||| || ||||||||| Sbjct 6844675 ATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 || || ||||||| ||| ||| | || || || ||||||||||| || || || ||| Sbjct 6844734 ATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 163084 AGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTAC 163133 ||||||||||| ||||| ||| |||||| | ||||| ||||| || Sbjct 6844792 AGTGCTATGCATAGTTCT-TTGGAACTTCTAGTTGAATCAGGGAAACCAC 6844840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553017420444240