Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq9 206 3e-48 seq14 154 2e-32 seq28 134 2e-26 seq3071 87.8 2e-12 seq8 87.8 2e-12 >seq9 Length=62778564 Score = 206 bits (228), Expect = 3e-48 Identities = 433/642 (67%), Gaps = 5/642 (1%) Strand=Plus/Minus Query 164987 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCC 165046 |||| | || | ||||||||||| |||||||||||||| ||||| || || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 165047 ACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 165106 ||| ||||| || |||||| || | || ||||| || || || || ||| |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 165107 CCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGT 165166 | | | || | ||||| || || || ||| | || || | || ||| ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 165167 TGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAA-ATA 165225 ||| ||| | | || | || || ||| |||||| |||| | || || |||| || Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 56234710 Query 165226 CATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAG 165285 |||| || |||| || ||||||| || || ||| | | | || | | Sbjct 56234709 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 56234650 Query 165286 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGT 165345 |||| |||||||| |||||||| || |||||||| ||||| | ||||| || ||| | Sbjct 56234649 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 56234590 Query 165346 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA 165405 |||| || || | ||| | || || || ||||| ||||| || || | ||| | ||| Sbjct 56234589 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 56234530 Query 165406 CATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTC 165465 || ||| || | ||||| ||| | ||||| |||| || | ||| | | Sbjct 56234529 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 56234470 Query 165466 AGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTAT 165525 | || || | ||||| |||||||| | | |||| || ||||| || ||||| || || | Sbjct 56234469 AAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTCTTT 56234411 Query 165526 TGAATGAAGGACTACGTGCTTGGTTGGCACCT---GCTGATCAACCCCATGAAAACTTTA 165582 | || ||||| | || ||||| |||| || | | | || || ||||||||| ||| Sbjct 56234410 TAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTA 56234351 Query 165583 TCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | ||| | || || || || || | || | | | ||||||| Sbjct 56234350 TATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAAT 56234309 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 ||||| || ||||| || || |||| || || || ||| | || ||||| || Sbjct 18477154 ACTCCCGAAGGAGAGCAAGAGGTTGAGTGCGACGACGACGTTTACGTCCTCGACGCTGCG 18477095 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || |||||||| | || | ||||||||| ||||| ||| ||||||| |||||| Sbjct 18477094 GAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGTGCA 18477035 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| ||||| |||||| ||| ||| ||| ||||| || ||||| ||| Sbjct 18477034 GGTAAAGTTGTGTCTGGTTTTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 18476975 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 ||||| ||||| || || || || |||| || ||||| || |||||| Sbjct 18476974 ATTGCTGCAGGGTTTGTTCTCACCTGTGCGGCTTATCCTACTTCTGAT 18476927 >seq14 Length=28343526 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 ||||| || |||||| || || |||| || || || ||| | || ||||| || Sbjct 23727145 ACTCCAGAAGGAGAACAAGAGGTTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCT 23727204 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || ||||| ||| | || | ||||||||| ||||||||| |||||||| |||||| Sbjct 23727205 GAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCA 23727264 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| |||||| ||||||| ||| ||| ||| ||||| || ||||| ||| Sbjct 23727265 GGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 23727324 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 ||||| | ||||||||| || || |||| || ||||| || |||||| Sbjct 23727325 ATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 23727372 Score = 136 bits (150), Expect = 4e-27 Identities = 192/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 163219 TATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTA 163278 ||||||| |||| ||||||||| | | | ||||| || || ||||| ||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 163279 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 163338 ||||| || | ||||||||| | || | || ||| || ||| || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 163339 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTC 163398 || ||| ||||| ||||| || || |||||||| || ||||||| ||| |||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 163399 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTC 163458 |||||| | ||||||||||| || |||||||| || || ||||| || || |||||||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 163459 TTCGGTGGATCACTCTTCTCGGCAATGCAT 163488 ||||| || || || || || |||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCAT 20845268 >seq28 Length=1539140 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 |||||||| ||||| || || |||| || || || ||| | || ||||| || Sbjct 841728 ACTCCTGAAGGAGAGCAAGAGGTTGAGTGCGACGACGACGTCTACGTCCTTGACGCTGCT 841669 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || ||||| ||| | || | ||||||||| ||||||||| | ||||| |||||| Sbjct 841668 GAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCTGCTCGAGCTGTGCA 841609 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| |||||| ||||||| ||| ||| ||| ||||| || ||||| ||| Sbjct 841608 GGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 841549 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATC 164237 ||||| | ||||||||| || || |||| || |||| Sbjct 841548 ATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATC 841512 >seq3071 Length=6037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 163729 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAAC 163788 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| | || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 163789 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGA 163841 |||||||| || | ||||||| ||| || ||||||||||||||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 >seq8 Length=29345952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 163369 ATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 163428 |||||||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||| Sbjct 6844686 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 6844745 Query 163429 CCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCAT 163488 | ||| ||||| || || |||||||| ||||| || || || || || |||||| Sbjct 6844746 CATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 6844803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 163729 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAAC 163788 ||||| || |||||||| |||||||| || | ||||| |||| || ||||| | || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 163789 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGA 163841 |||||||| || | ||||||| ||| || ||||||||||||||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563140986990480