Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 235 1e-56 seq16 223 6e-53 seq18 214 3e-50 seq6 196 9e-45 >seq2 Length=25468329 Score = 235 bits (260), Expect = 1e-56 Identities = 456/665 (69%), Gaps = 21/665 (3%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | ||| ||| ||| ||||| ||| || | Sbjct 22243631 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCCTCCGATAG 22243690 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | || ||||| || ||| || ||||| | ||| | ||||||||| Sbjct 22243691 CTTCGTCCTCAA---CAAGGTATAGATCAGGCACGCGAAGTCGCAGTGAAGGCCTTCGTC 22243747 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 ||| ||| ||| ||||||||||| ||| || ||||||| ||| | || |||||||| Sbjct 22243748 CCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCTCGCTTCTTGAGCCA 22243807 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || ||||| |||||| || || Sbjct 22243808 GAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCACGCGAAGGCCACGAT 22243867 Query 48280 CCTCTCTCCGAAAG-AAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| |||||| | | || ||| |||||| | ||||| | ||||||| Sbjct 22243868 CCTCTCGGCGAAAGTCTGAGATC-CGTC---GATCCACTTCAAGGCCCATTGGGCCTTCT 22243923 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTG-CGTCC 48397 || || ||| || || ||||| || || |||||||| | | | ||| | || |||| Sbjct 22243924 TCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTC-CTTGTTGTCC 22243982 Query 48398 GCAACATAGGTAGTGAGCA----GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGC 48453 | || ||| |||| ||| ||||||||| ||||| | |||||| || || Sbjct 22243983 TTGATGTACGTATCTAGCAAGAGGCT----GTACATCTCCGAGTGGATATTCTCAATCGC 22244038 Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||||||||||||||||||||| | ||||| | |||||||| || | ||| | Sbjct 22244039 GATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACCTGCACGTCGGACATGAACCGGGA 22244098 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 |||||||| ||| || || || || || || |||||||| ||||| ||||| | Sbjct 22244099 GGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGAT 22244158 Query 48574 GAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTC 48630 ||| ||||||||| || | |||| | | |||| | | ||||| | ||||| Sbjct 22244159 GAAGTGGCGCTCGCCGTCGTTGAGGTTGGTCTCCCAGTCGCGGGTGTCTTGGGAGAGGTC 22244218 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGG 48690 ||||| || | ||||||||||| || ||||| |||||||| |||| || | || Sbjct 22244219 GACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGG 22244278 Query 48691 ATAGT 48695 |||| Sbjct 22244279 GTAGT 22244283 >seq16 Length=18736220 Score = 223 bits (246), Expect = 6e-53 Identities = 449/660 (68%), Gaps = 11/660 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | ||| ||| | | ||||| ||| ||| | Sbjct 837042 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCTCACGCGCTCCTCCGAGAG 836983 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | |||| | || |||| || ||| || ||||| | ||||| ||||||||| Sbjct 836982 CTTCGTCCTCAGGAG---GGAGTAGATCAGGCACGCGAAGTCGCAGTGCAGGCCTTCGTC 836926 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 | ||| ||| ||||||||||| ||| || ||||||| ||| | || |||||||| Sbjct 836925 TCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTCTTGAGCCA 836866 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || ||||| || ||||| || Sbjct 836865 GAAGATCGAGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCAAGCAAACGCCACGAT 836806 Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| | |||| || | | || | |||||| | | ||||| | ||||||| Sbjct 836805 CCTCTCGGC-AAAG--GC-CTGTGATCCGTCGATCCACGTCATGGCCCATTGGGCCTTCT 836750 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 || || ||| || |||||||| || || |||||||| | | | ||| | ||| Sbjct 836749 TCGCGACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTCTCTATTATCCT 836690 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || ||| | ||| ||||||||| ||||| | ||||| || ||||||| Sbjct 836689 TGATGTAAGTATCTAACAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCT 836630 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCA 48518 |||||||||||||||| | |||||| | ||||| || || | ||| | | Sbjct 836629 GGAACCCGTAGAAGGCGCGGGCCTCGGAGACCTGGACGTCGGACATGAAACGAGAGGCGA 836570 Query 48519 GATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAAT 48578 | ||||| ||| ||||| || || || || |||||||| ||||| ||||| | ||| | Sbjct 836569 GGTTCTCGAGGACGATCCCGTCGGATGCGGCGAAGAAGGCGAGGACGTGTTTGACGAAGT 836510 Query 48579 GGCGCTCGTTGTGGGTGAGA---GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTT 48635 ||||||| || | ||||| | | |||| | | ||||| | ||||| |||| Sbjct 836509 GGCGCTCTCCGTCGTTGAGATTTTCCTCCCAGTCGCGGGGGTCTTGGGAGAGGTCGACTT 836450 Query 48636 CTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 | || | ||||||||||| || ||||| |||||||| |||| || | || |||| Sbjct 836449 CCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGT 836390 >seq18 Length=77673080 Score = 214 bits (236), Expect = 3e-50 Identities = 445/656 (68%), Gaps = 10/656 (2%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| |||||| || | ||| ||| ||| ||||| ||| | | | Sbjct 68188195 AAACTCCCTCTCGATCTCCACGGCGTCGCACACGATCGACTTCACGCGCTCCTCCGTGAG 68188254 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | |||| || || |||| || ||| || || || | ||| | ||||||||| Sbjct 68188255 CTTCGTCCTCAGGAGCGTG---TAGATCAGGCACGCGAAATCGCAGTGAAGGCCTTCGTC 68188311 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 | ||| ||| ||||||||||| | || ||||||| ||| | || |||||||| Sbjct 68188312 TCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCGGGCATGAGCCCTCGCTTCTTGAGCCA 68188371 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || ||||| |||||| || || Sbjct 68188372 GAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCACGCGAAGGCCACGAT 68188431 Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||||| |||||| | | || |||||| | | ||||| | |||||||| Sbjct 68188432 CCTCTCGGCGAAAGTCTGGGACCCATC---GATCCACGTCATGGCCCATTGGGCCTTCTT 68188488 Query 48340 CTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTG-CGTCCG 48398 | || ||| || || ||||| || || |||||||| | | | ||| | || |||| Sbjct 68188489 CGCGACGCAGGGGATGGTCTCGATCGCGCGGAAGAGATGGTCCCTCTC-CTTGTTGTCCT 68188547 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || || | ||| ||||||||| ||||| | ||||| || ||||||| Sbjct 68188548 TGATGTACGTGTCTAACAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCT 68188607 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC- 48517 |||||||||||||||| | ||||| | ||||| || || | ||| | | || Sbjct 68188608 GGAACCCGTAGAAGGCGCGCGCCTCGGAGACCTGGACGTCGGACATGAA-CCGTGAGGCG 68188666 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 || ||||| ||| || || || || || || |||||||| ||||| ||||| | ||| Sbjct 68188667 AGGTTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAG 68188726 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 |||||||| || | ||||| | |||| | || ||| | | ||||| ||||| Sbjct 68188727 TGGCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCC 68188786 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || | ||||||||||| || || || |||||||| |||| || | ||| || Sbjct 68188787 TCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTA 68188842 >seq6 Length=38054609 Score = 196 bits (216), Expect = 9e-45 Identities = 440/657 (67%), Gaps = 8/657 (1%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | |||||| ||| ||||| ||| | | | Sbjct 29820245 AAACTCCCTCTCGATCTCCACCGCGTCGCAAACAATCGACTTCACGCGCTCCTCCGTGAG 29820186 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | | ||||| || ||| || ||||| | ||| | ||||||||| Sbjct 29820185 CTTCGTCCTCAATAGAGT---ATAGATCAGGCACGCGAAGTCGCAGTGAAGGCCTTCGTC 29820129 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | ||||||||||| | |||||||||| ||| | || || ||||| Sbjct 29820128 TCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTCTTCAGCCA 29820069 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || ||||| || ||||| || Sbjct 29820068 GAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAAGCAAACGCCACGAT 29820009 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| |||||| | | || ||| |||||| | | ||||| | ||||||| Sbjct 29820008 CCTCTCGGCGAAAGTCTGAGATCC-GTC---GATCCACGTCATGGCCCATTGGGCCTTCT 29819953 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 || || ||| || || || || || || |||||||| | | | ||| ||| Sbjct 29819952 TCGCGACGCAAGGTATGGTTTCAATCGCGCGGAAGAGGTGGTCCCTCTCTTTATTATCCT 29819893 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || || |||||| ||||||||| ||||| | |||||| || ||||||| Sbjct 29819892 TGATGTACGTGTCGAGCAGGAGGCTGTACATCTCTGAGTGGATATTCTCAATCGCGATCT 29819833 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCA 48518 |||||||||||||||| | ||||| | || ||||| || | ||| | | Sbjct 29819832 GGAACCCGTAGAAGGCACGCGCCTCGGAGACTTGCACGTCGGACATGAACCGGGAGGCGA 29819773 Query 48519 GATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAAT 48578 ||||||| || || || || || || || |||||||| ||||| ||||| | ||| | Sbjct 29819772 GATTCTCTAAAACGATTCCGTCGGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGT 29819713 Query 48579 GGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTT 48638 ||||||| || | ||||| | |||| | | ||||| | || || ||||||| Sbjct 29819712 GGCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGAGTGTCTTGGGAGAGATCGACTTCTT 29819653 Query 48639 CCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 | | |||||||| || || || || |||||||| |||| || | ||| |||| Sbjct 29819652 CGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTAGT 29819596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931419316016640